Name: Halomonas sediminicola CPS11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133160

Type strain:

Species: Halomonas sediminicola

Strain Designation: CPS11

Culture col. no.: KACC 18262, NBRC 110636

NCBI tax ID(s): 1517558 (species)

Section

Halomonas sediminicola CPS11 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from sediment of a crystallizing pond at a solar saltern.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas sediminicola**
	Full Scientific Name (LPSN)	Halomonas sediminicola Lee et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #24935]	Gram stain	negative

[Ref.: #24935]	Cell length	1.2-1.5 µm

[Ref.: #24935]	Cell width	0.5-0.7 µm

[Ref.: #24935]	Cell shape	rod-shaped

[Ref.: #24935]	Motility	yes

[Ref.: #24935]	Flagellum arrangement	lophotrichous

[Ref.: #24935]	Colony size	0.8-1.2 mm
[Ref.: #24935]	Colony color	cream-yellow
[Ref.: #24935]	Colony shape	circular
[Ref.: #24935]	Incubation period	3 days
[Ref.: #24935]	Cultivation medium used	MA supplemented with 8 % (w/v) NaCl

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24935]

Culture medium

MA supplemented with 8 % (w/v) NaCl

[Ref.: #24935]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #24935]			growth	10-37 °C
[Ref.: #24935]			optimum	28 °C

[Ref.: #24935]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #24935]			optimum	7.0-8.0
[Ref.: #24935]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #24935]

Oxygen tolerance

aerobe

[Ref.: #24935]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #24935]		NaCl		growth	1.0-20.0	%(w/v)
[Ref.: #24935]		NaCl		optimum	10	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24935]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #24935]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #24935]	amygdalin ChEBI	-	carbon source
[Ref.: #24935]	amygdalin ChEBI	-	builds acid from
[Ref.: #24935]	arbutin ChEBI	-	carbon source
[Ref.: #24935]	arbutin ChEBI	-	builds acid from
[Ref.: #24935]	casein	-	hydrolysis
[Ref.: #24935]	cellobiose ChEBI	-	carbon source
[Ref.: #24935]	cellobiose ChEBI	-	builds acid from
[Ref.: #24935]	citrate ChEBI	-	carbon source
[Ref.: #24935]	D-arabinose ChEBI	-	builds acid from
[Ref.: #24935]	D-arabitol ChEBI	-	builds acid from
[Ref.: #24935]	D-fructose ChEBI	-	carbon source
[Ref.: #24935]	D-fructose ChEBI	-	builds acid from
[Ref.: #24935]	D-fucose ChEBI	-	builds acid from
[Ref.: #24935]	D-galactose ChEBI	-	builds acid from
[Ref.: #24935]	D-galactose ChEBI	+	carbon source
[Ref.: #24935]	D-glucose ChEBI	-	carbon source
[Ref.: #24935]	D-glucose ChEBI	-	builds acid from
[Ref.: #24935]	D-lyxose ChEBI	-	builds acid from
[Ref.: #24935]	D-mannitol ChEBI	-	builds acid from
[Ref.: #24935]	D-mannitol ChEBI	+	carbon source
[Ref.: #24935]	D-mannose ChEBI	+	carbon source
[Ref.: #24935]	D-mannose ChEBI	+	builds acid from
[Ref.: #24935]	D-ribose ChEBI	-	carbon source
[Ref.: #24935]	D-ribose ChEBI	-	builds acid from
[Ref.: #24935]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #24935]	D-sorbitol ChEBI	+	carbon source
[Ref.: #24935]	D-tagatose ChEBI	-	builds acid from
[Ref.: #24935]	D-xylose ChEBI	+	carbon source
[Ref.: #24935]	D-xylose ChEBI	+	builds acid from
[Ref.: #24935]	dna ChEBI	-	hydrolysis
[Ref.: #24935]	erythritol ChEBI	-	builds acid from
[Ref.: #24935]	esculin ChEBI	-	carbon source
[Ref.: #24935]	esculin ChEBI	-	builds acid from
[Ref.: #24935]	esculin ChEBI	+	hydrolysis
[Ref.: #24935]	galactitol ChEBI	-	builds acid from
[Ref.: #24935]	gelatin ChEBI	+	hydrolysis
[Ref.: #24935]	gentiobiose ChEBI	-	carbon source
[Ref.: #24935]	gentiobiose ChEBI	-	builds acid from
[Ref.: #24935]	gluconate ChEBI	-	carbon source
[Ref.: #24935]	gluconate ChEBI	-	builds acid from
[Ref.: #24935]	glucose ChEBI	-	fermentation
[Ref.: #24935]	glycerol ChEBI	+	carbon source
[Ref.: #24935]	glycerol ChEBI	+	builds acid from
[Ref.: #24935]	glycogen ChEBI	-	carbon source
[Ref.: #24935]	glycogen ChEBI	-	builds acid from
[Ref.: #24935]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #24935]	inulin ChEBI	-	builds acid from
[Ref.: #24935]	L-arabinose ChEBI	-	builds acid from
[Ref.: #24935]	L-arabinose ChEBI	+	carbon source
[Ref.: #24935]	L-fucose ChEBI	-	builds acid from
[Ref.: #24935]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #24935]	L-sorbose ChEBI	-	builds acid from
[Ref.: #24935]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #24935]	L-xylose ChEBI	-	builds acid from
[Ref.: #24935]	lactose ChEBI	-	builds acid from
[Ref.: #24935]	lactose ChEBI	+	carbon source
[Ref.: #24935]	lactose ChEBI	+	builds acid from
[Ref.: #24935]	maltose ChEBI	-	carbon source
[Ref.: #24935]	maltose ChEBI	-	builds acid from
[Ref.: #24935]	melezitose ChEBI	-	builds acid from
[Ref.: #24935]	melibiose ChEBI	-	carbon source
[Ref.: #24935]	melibiose ChEBI	-	builds acid from
[Ref.: #24935]	methyl alpha-D-glucopyranoside ChEBI	-	carbon source
[Ref.: #24935]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #24935]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #24935]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #24935]	myo-inositol ChEBI	-	builds acid from
[Ref.: #24935]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #24935]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #24935]	nitrate ChEBI	+	reduction
[Ref.: #24935]	raffinose ChEBI	-	builds acid from
[Ref.: #24935]	rhamnose ChEBI	-	carbon source
[Ref.: #24935]	ribitol ChEBI	-	builds acid from
[Ref.: #24935]	ribitol ChEBI	+	carbon source
[Ref.: #24935]	salicin ChEBI	-	carbon source
[Ref.: #24935]	salicin ChEBI	-	builds acid from
[Ref.: #24935]	starch ChEBI	-	hydrolysis
[Ref.: #24935]	starch ChEBI	-	carbon source
[Ref.: #24935]	starch ChEBI	-	builds acid from
[Ref.: #24935]	sucrose ChEBI	+	carbon source
[Ref.: #24935]	sucrose ChEBI	+	builds acid from
[Ref.: #24935]	trehalose ChEBI	-	builds acid from
[Ref.: #24935]	trehalose ChEBI	+	carbon source
[Ref.: #24935]	tryptophan ChEBI	-	energy source
[Ref.: #24935]	turanose ChEBI	-	builds acid from
[Ref.: #24935]	tween 20 ChEBI	-	hydrolysis
[Ref.: #24935]	tween 80 ChEBI	-	hydrolysis
[Ref.: #24935]	urea ChEBI	+	hydrolysis
[Ref.: #24935]	xanthine ChEBI	-	hydrolysis
[Ref.: #24935]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #24935]		acetoin ChEBI	no
[Ref.: #24935]		indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #24935]	acetoin ChEBI	-
[Ref.: #24935]	glucose ChEBI		-
[Ref.: #24935]	indole ChEBI			-

	Enzyme	Enzyme activity	EC number
[Ref.: #24935]	acid phosphatase	-	3.1.3.2
[Ref.: #24935]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #24935]	alpha-fucosidase	-	3.2.1.51
[Ref.: #24935]	alpha-galactosidase	+	3.2.1.22
[Ref.: #24935]	alpha-glucosidase	-	3.2.1.20
[Ref.: #24935]	alpha-mannosidase	-	3.2.1.24
[Ref.: #24935]	beta-galactosidase	-	3.2.1.23
[Ref.: #24935]	beta-glucosidase	-	3.2.1.21
[Ref.: #24935]	beta-glucuronidase	+	3.2.1.31
[Ref.: #24935]	catalase	+	1.11.1.6
[Ref.: #24935]	cystine arylamidase	-	3.4.11.3
[Ref.: #24935]	cytochrome oxidase	+	1.9.3.1
[Ref.: #24935]	esterase (C 4)	-
[Ref.: #24935]	esterase lipase (C 8)	-
[Ref.: #24935]	leucine arylamidase	-	3.4.11.1
[Ref.: #24935]	lipase (C 14)	-
[Ref.: #24935]	lysine decarboxylase	+	4.1.1.18
[Ref.: #24935]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #24935]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #24935]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #24935]	phenylalanine deaminase	-	4.3.1.5
[Ref.: #24935]	trypsin	-	3.4.21.4
[Ref.: #24935]	tryptophan deaminase	-	4.1.99.1
[Ref.: #24935]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24935]	Sample type/isolated from	sediment of a crystallizing pond at a solar saltern
[Ref.: #24935]	Geographic location (country and/or sea, region)	Shinan
[Ref.: #24935]	Country	Republic of Korea
[Ref.: #24935]	Country ISO 3 Code	KOR
[Ref.: #24935]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#Sediment
#Condition	#Saline	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24935]	16S rRNA	AB971837		GenBank

[Ref.: #24935]

GC-content

64.3 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24935]

Culture collection no.

KACC 18262, NBRC 110636

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas icarae sp. nov., a moderately halophilic bacterium isolated from beach soil in India.	Pandiyan K, Kushwaha P, Bagul SY, Chakdar H, Madhaiyan M, Krishnamurthi S, Kumar P, Karthikeyan N, Singh A, Kumar M, Singh UB, Saxena AK	Int J Syst Evol Microbiol	10.1099/ijsem.0.004611	2020	*
Phylogeny	Halomonas urmiana sp. nov., a moderately halophilic bacterium isolated from Urmia Lake in Iran.	Khan SA, Zununi Vahed S, Forouhandeh H, Tarhriz V, Chaparzadeh N, Hejazi MA, Jeon CO, Hejazi MS	Int J Syst Evol Microbiol	10.1099/ijsem.0.004005	2020	*
Phylogeny	Halomonas tabrizica sp. nov., a novel moderately halophilic bacterium isolated from Urmia Lake in Iran.	Vahed SZ, Forouhandeh H, Tarhriz V, Chaparzadeh N, Hejazi MA, Jeon CO, Hejazi MS, Lee Y	Antonie Van Leeuwenhoek	10.1007/s10482-018-1018-8	2018	*
Phylogeny	Halomonas sediminicola sp. nov., a moderately halophilic bacterium isolated from a solar saltern sediment.	Lee JC, Kim SJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001278	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24935

J.-C. K. Lee, Su-Jin,Whang, Kyung-Sook: Halomonas sediminicola sp. nov., a moderately halophilic bacterium isolated from a solar saltern sediment. IJSEM 66: 3865 - 3872 2016 ( DOI 10.1099/ijsem.0.001278 , PubMed 27380915 )

* These data were automatically processed and therefore are not curated

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