Name: Lentzea albidocapillata subsp. violacea LM 036
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13313

Type strain:

Species: Lentzea albidocapillata subsp. violacea

Strain Designation: LM 036

Culture col. no.: DSM 44796, IMSNU 50388, KCTC 9948, JCM 10975, BCRC 16959, CGMCC 4.1702, CGMCC 4.2093

Strain history: <- J. Chun, SNU

NCBI tax ID(s): 128104 (subspecies)

SI-ID 88654

KCTC 9948, DSM 44796, CGMCC 4.2093

Special Collections

Section

Lentzea albidocapillata subsp. violacea LM 036 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil from gold mine cave.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Lentzea*
	Species	**Lentzea albidocapillata subsp. violacea**
	Full Scientific Name (LPSN)	Lentzea albidocapillata subsp. violacea (Lee et al. 2000) Nouioui et al. 2018

	Synonym	Lentzea violacea
	Synonym	Saccharothrix violacea

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

[Ref.: #69480]	Motility	no Confidence in %92.1

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11983]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #11983]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #11983]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %92.16

[Ref.: #69481]

Ability of spore formation

yes Confidence in %97

[Ref.: #67770]	Observation	quinones: MK-9(H₄), MK-9(H₂), MK-9(H₆)
[Ref.: #67771]	Observation	quinones: MK-9(H4)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11983]	Sample type/isolated from	soil from gold mine cave
[Ref.: #11983]	Geographic location (country and/or sea, region)	Korea, Kongju
[Ref.: #11983]	Country	Republic of Korea
[Ref.: #11983]	Country ISO 3 Code	KOR
[Ref.: #11983]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil at a gold mine cave
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kongju
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil from gold mine cave
[Ref.: #67771]	Geographic location (country and/or sea, region)	Kongju
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ242633 (>99% sequence identity) for Lentzea from Microbeatlas

Aquatic Samples	15
Soil Samples	231
Animal Samples	10
Plant Samples	33
Total Samples	289

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11983]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11983]	Saccharothrix violacea 16S rRNA gene (strain LM 036T)	AJ242633	1508	GenBank ENA	128104 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lentzea albidocapillata subsp. violacea DSM 44796	GCA_900100275	scaffold	GenBank ENA	128104 tax ID
[Ref.: #66792]	Lentzea violacea strain DSM 44796	128104.3	wgs	PATRIC	128104 tax ID	*
[Ref.: #66792]	Lentzea albidocapillata DSM 44796	2619619033	draft	JGI IMG/M	128104 tax ID	*

[Ref.: #11983]	GC-content	69.6 mol%
[Ref.: #67770]	GC-content	69.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lentzea albidocapillata subsp. violacea DSM 44796 NCBI: GCA_900100275.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	97	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lentzea violacea strain DSM 44796 PATRIC: 128104.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.75	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.932	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	87.414	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	92.16	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92.1	no

Availability in culture collections External links

[Ref.: #11983]

Culture collection no.

DSM 44796, IMSNU 50388, KCTC 9948, JCM 10975, BCRC 16959, CGMCC 4.1702, CGMCC 4.2093

[Ref.: #82513]	SI-ID 88654	*
[Ref.: #82514]	SI-ID 317403	*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lentzea indica sp. nov., a novel actinobacteria isolated from Indian Himalayan-soil.	Maiti PK, Mandal S	Antonie Van Leeuwenhoek	10.1007/s10482-020-01449-8	2020	*
Phylogeny	Lentzea soli sp. nov., an actinomycete isolated from soil.	Li D, Zheng W, Zhao J, Han L, Zhao X, Jiang H, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.002698	2018	*
Phylogeny	Saccharothrix violacea sp. nov., isolated from a gold mine cave, and Saccharothrix albidocapillata comb. nov.	Lee SD, Kim ES, Roe JH, Kim J, Kang SO, Hah YC	Int J Syst Evol Microbiol	10.1099/00207713-50-3-1315	2000	*

References

#11983

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44796

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82513

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID88654.1 )

#82514

* These data were automatically processed and therefore are not curated

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Lentzea albidocapillata subsp. violacea DSM 44796

Lentzea violacea strain DSM 44796

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