Lentzea flaviverrucosa (DSM 44664, AS 4.0578, JCM 11373)

Name: Lentzea flaviverrucosa (DSM 44664, AS 4.0578, JCM 11373)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13312

Type strain

Strain Designation AS4.0578

Culture col. no. DSM 44664 AS 4.0578 JCM 11373 NBRC 100042 CIP 107743 3 more

NCBI tax ID(s) 200379

Special Collections DSMZ JCM CIP

History <- Z. Liu, AS, China Z. Liu AS 4.0578. CIP <- 2002, Z. Liu, Chinese Academy Sciences, Beijing, China: strain AS4.0578 <- CGMCC <- JCM <- Z. Liu

Links

Lentzea flaviverrucosa AS4.0578 is an obligate aerobe, Gram-positive, rod-shaped bacterium that was isolated from soil.

Gram-positive rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 100722

AS 4.0578,JCM 11373,DSM 44664,NBRC 100042,CIP 107743,CGMCC 4.0578

@ref 20215

Last LPSN update 2026-02-09 11:21:06

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Lentzea

Species Lentzea flaviverrucosa

Full scientific name Lentzea flaviverrucosa (ex Yan and Deng 1966) Xie et al. 2002

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
119380	positive	rod-shaped
125439	positive		95.4
125438			91.5

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11860	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
39933	MEDIUM 275 - for Actinomadura rugatobispora and Actinomadura verrucosospora		Distilled water make up to (1000.000 ml);Sodium chloride (1.000 g);Magnesium sulphate heptahydrate (1.000 g);Agar (20.000 g);Ammonium sulphate (2.000 g);Starch maize (10.000 g);Calcium carbonate (2.000 g);Trace salt solution - M00447 (1.000 ml)
119380	CIP Medium 275	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
11860	positive	growth	28
39933	positive	growth	30
67770	positive	growth	28
119380	positive	growth	22-37
119380	negative	growth	10
119380	negative	growth	15
119380	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
119380	obligate aerobe
125439	obligate aerobe	98.4

Observation

67770

Observationquinones: MK-9(H₄), MK-9(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
119380	17632 ChEBI	nitrate	-	reduction
119380	17632 ChEBI	nitrate	-	respiration
119380	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119380	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
119380	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119380	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119380	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
119380	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
119380	ornithine decarboxylase	-	4.1.1.17
119380	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119380	-	+	+	+	-	+	-	-	-	-	+	-	+	+	-	+	-	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
11860	soil	Shanxi province, Wutaishan Mountain	China	CHN	Asia
67770	Soil	Wutaishan Mountain, Shanxi Province	China	CHN	Asia
119380	Environment, Soil	Wutaishan mountain	China	CHN	Asia	1966

Taxonmaps

69479

Global distribution of 16S sequence AF183957 (>99% sequence identity) for Lentzea from Microbeatlas

Aquatic Samples	15
Soil Samples	231
Animal Samples	10
Plant Samples	33
Total Samples	289

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11860	1	Risk group (German classification) According to TRBA 466
119380	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2663762721 annotated assembly for Lentzea flaviverrucosa CGMCC 4.578	scaffold	GCA_900110985	200379.5	2663762721	200379	72
67770	ASM335044v1 assembly for Lentzea flaviverrucosa DSM 44664	scaffold	GCA_003350445	200379.4	2770939509	200379	71.17

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
11860	Lentzea flavoverrucosus 16S ribosomal RNA gene, partial sequence	AF183957	1426		200379

GC content

@ref	GC-content (mol%)	Method
11860	64.1	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lentzea flaviverrucosa CGMCC 4.578
NCBI: GCA_900110985

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	50.80	no
125439	motility	BacteriaNetⓘ	no	66.60	no
125439	gram_stain	BacteriaNetⓘ	positive	95.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lentzea flaviverrucosa strain DSM 44664
PATRIC: 200379.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.58	no
125438	anaerobic	anaerobicⓘ	no	97.36	yes
125438	spore-forming	spore-formingⓘ	yes	87.29	no
125438	aerobic	aerobicⓘ	yes	89.16	no
125438	thermophilic	thermophileⓘ	no	97.00	yes
125438	flagellated	motile2+ⓘ	no	91.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Elucidation of Chalkophomycin Biosynthesis Reveals N-Hydroxypyrrole-Forming Enzymes.	Crooke AM, Chand AK, Cui Z, Balskus EP.	J Am Chem Soc	10.1021/jacs.4c04712	2024
Genetics	Biosynthetic novelty index reveals the metabolic potential of rare actinobacteria isolated from highly oligotrophic sediments.	Gonzalez-Salazar LA, Quezada M, Rodriguez-Orduna L, Ramos-Aboites H, Capon RJ, Souza-Saldivar V, Barona-Gomez F, Licona-Cassani C.	Microb Genom	10.1099/mgen.0.000921	2023
	Discovery of unusual dimeric piperazyl cyclopeptides encoded by a Lentzea flaviverrucosa DSM 44664 biosynthetic supercluster.	Li C, Hu Y, Wu X, Stumpf SD, Qi Y, D'Alessandro JM, Nepal KK, Sarotti AM, Cao S, Blodgett JAV	Proc Natl Acad Sci U S A	10.1073/pnas.2117941119	2022
Phylogeny	Description of Lentzea flaviverrucosa sp. nov. and transfer of the type strain of Saccharothrix aerocolonigenes subsp. staurosporea to Lentzea albida.	Xie Q, Wang Y, Huang Y, Wu Y, Ba F, Liu Z	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1815	2002

References

#11860	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44664
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39933	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119380	Collection of Institut Pasteur ; Curators of the CIP; CIP 107743
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lentzea flaviverrucosa (DSM 44664, AS 4.0578, JCM 11373)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Metabolite utilization

Antibiotic resistance

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900110985

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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