Desulfogranum aggregans (DSM 28693, JCM 19994, SM40)

Name: Desulfogranum aggregans (DSM 28693, JCM 19994, SM40)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133051

Type strain

Strain Designation SM40

Culture col. no. DSM 28693 JCM 19994 SM40

NCBI tax ID(s) 1825660

Special Collections DSMZ JCM

History DSMZ <- J.-L. Cayol, Université d'Aix-Marseille, Marseille, France; SM40 <- H. Karrhat, Centre de Biotechnologie de Sfax, Sfax, Tunisia; JCM <-- M.-L. Fardeau; IRD-MIO, Aix-Marseille Univ., France; SM40.

Links

Desulfogranum aggregans SM40 is a bacterium that was isolated from coastal marine sediment.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 401360

JCM 19994,DSM 28693

@ref 20215

Last LPSN update 2026-05-29 08:38:00

Domain Bacteria

Phylum Thermodesulfobacteriota

Class Desulfobulbia

Order Desulfobulbales

Family Desulfobulbaceae

Genus Desulfogranum

Species Desulfogranum aggregans

Full scientific name Desulfogranum aggregans Galushko and Kuever 2021

Synonyms (1)

"Desulfobulbus aggregans"

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24839	DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)		Medium recipe at MediaDive	Name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c) Composition: NaCl 20.9372 g/l Na2SO4 2.99103 g/l MgCl2 x 6 H2O 2.99103 g/l Na-L-lactate 2.49252 g/l Na2CO3 1.49551 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24839	positive	growth	35
67770	positive	growth	35

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
24839	coastal marine sediment	Gulf of Gabes, region of Skhira	Tunisia	TUN	Africa
67770	Marine sediment in the region of Skhira located in the Gulf of Gabes		Tunisia	TUN	Africa

Taxonmaps

69479

Global distribution of 16S sequence KU180234 (>99% sequence identity) for Desulfobulbus aggregans subclade from Microbeatlas

Aquatic Samples	1004
Soil Samples	13
Animal Samples	25
Plant Samples	12
Total Samples	1054

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24839	Desulfogranum aggregans strain SM40 16S ribosomal RNA gene, partial sequence	KU180234	1471		1825660

GC content

@ref	GC-content (mol%)	Method
24839	52.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfobulbus aggregans sp. nov., a Novel Sulfate Reducing Bacterium Isolated from Marine Sediment from the Gulf of Gabes.	Kharrat H, Karray F, Bartoli M, Ben Hnia W, Mhiri N, Fardeau ML, Bennour F, Kamoun L, Alazard D, Sayadi S	Curr Microbiol	10.1007/s00284-017-1211-4	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24839	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28693
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Desulfogranum aggregans (DSM 28693, JCM 19994, SM40)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

Help

Social Media