Name: Desulfogranum aggregans SM40
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133051

Type strain:

Species: Desulfogranum aggregans

Strain Designation: SM40

Culture col. no.: DSM 28693, JCM 19994

Strain history: M.-L. Fardeau; IRD-MIO, Aix-Marseille Univ., France; SM40.

NCBI tax ID(s): 1825660 (species)

SI-ID 401360

DSM 28693

Special Collections

DSMZ
JCM

Section

Desulfogranum aggregans SM40 is a bacterium that was isolated from coastal marine sediment.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfobacterales*
	Family	*Desulfobulbaceae*
	Genus	*Desulfogranum*
	Species	**Desulfogranum aggregans**
	Full Scientific Name (LPSN)	Desulfogranum aggregans Galushko and Kuever 2021

Synonym

"Desulfobulbus aggregans"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24839]

Culture medium

DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)

[Ref.: #24839]

Culture medium growth

[Ref.: #24839]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24839]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24839]			growth	35 °C
[Ref.: #67770]			growth	35 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24839]	Sample type/isolated from	coastal marine sediment
[Ref.: #24839]	Geographic location (country and/or sea, region)	Gulf of Gabes, region of Skhira
[Ref.: #24839]	Country	Tunisia
[Ref.: #24839]	Country ISO 3 Code	TUN
[Ref.: #24839]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Marine sediment in the region of Skhira located in the Gulf of Gabes
[Ref.: #67770]	Country	Tunisia
[Ref.: #67770]	Country ISO 3 Code	TUN
[Ref.: #67770]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU180234 (>99% sequence identity) for Desulfobulbus aggregans subclade from Microbeatlas

Aquatic Samples	1004
Soil Samples	13
Animal Samples	25
Plant Samples	12
Total Samples	1054

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24839]	Desulfogranum aggregans strain SM40 16S ribosomal RNA gene, partial sequence	KU180234	1471	GenBank ENA	1825660 tax ID

[Ref.: #24839]

GC-content

52.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24839]

Culture collection no.

DSM 28693, JCM 19994

[Ref.: #91318]

SI-ID 401360

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfobulbus aggregans sp. nov., a Novel Sulfate Reducing Bacterium Isolated from Marine Sediment from the Gulf of Gabes.	Kharrat H, Karray F, Bartoli M, Ben Hnia W, Mhiri N, Fardeau ML, Bennour F, Kamoun L, Alazard D, Sayadi S	Curr Microbiol	10.1007/s00284-017-1211-4	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24839

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28693

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91318

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401360.1 )

* These data were automatically processed and therefore are not curated

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