Strain identifier

BacDive ID: 133051

Type strain: Yes

Species: Desulfogranum aggregans

Strain Designation: SM40

Strain history: M.-L. Fardeau; IRD-MIO, Aix-Marseille Univ., France; SM40.

NCBI tax ID(s): 1825660 (species)

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General

@ref: 24839

BacDive-ID: 133051

DSM-Number: 28693

keywords: 16S sequence, Bacteria

description: Desulfogranum aggregans SM40 is a bacterium that was isolated from coastal marine sediment.

NCBI tax id

  • NCBI tax id: 1825660
  • Matching level: species

strain history

@refhistory
24839<- J.-L. Cayol, IRD, Marseille; SM40 <- H. Karrhat
67770M.-L. Fardeau; IRD-MIO, Aix-Marseille Univ., France; SM40.

doi: 10.13145/bacdive133051.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfobacterales
  • family: Desulfobulbaceae
  • genus: Desulfogranum
  • species: Desulfogranum aggregans
  • full scientific name: Desulfogranum aggregans Galushko and Kuever 2021

  • synonyms

    • @ref: 20215
    • synonym: Desulfobulbus aggregans

@ref: 24839

domain: Bacteria

phylum: Pseudomonadota

class: Deltaproteobacteria

order: Desulfobacterales

family: Desulfobulbaceae

genus: Desulfogranum

species: Desulfogranum aggregans

full scientific name: Desulfogranum aggregans

strain designation: SM40

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 24839
  • name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/195c
  • composition: Name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c) Composition: NaCl 20.9372 g/l Na2SO4 2.99103 g/l MgCl2 x 6 H2O 2.99103 g/l Na-L-lactate 2.49252 g/l Na2CO3 1.49551 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

@refgrowthtypetemperature
24839positivegrowth35
67770positivegrowth35

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
24839coastal marine sedimentGulf of Gabes, region of SkhiraTunisiaTUNAfrica
67770Marine sediment in the region of Skhira located in the Gulf of GabesTunisiaTUNAfrica

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_148089.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_128;96_56385;97_72858;98_97969;99_148089&stattab=map
  • Last taxonomy: Desulfobulbus aggregans subclade
  • 16S sequence: KU180234
  • Sequence Identity:
  • Total samples: 1054
  • soil counts: 13
  • aquatic counts: 1004
  • animal counts: 25
  • plant counts: 12

Sequence information

16S sequences

  • @ref: 24839
  • description: Desulfogranum aggregans strain SM40 16S ribosomal RNA gene, partial sequence
  • accession: KU180234
  • length: 1471
  • database: nuccore
  • NCBI tax ID: 1825660

GC content

  • @ref: 24839
  • GC-content: 52.6
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 24839

culture collection no.: DSM 28693, JCM 19994

straininfo link

  • @ref: 91318
  • straininfo: 401360

literature

  • topic: Phylogeny
  • Pubmed-ID: 28213662
  • title: Desulfobulbus aggregans sp. nov., a Novel Sulfate Reducing Bacterium Isolated from Marine Sediment from the Gulf of Gabes.
  • authors: Kharrat H, Karray F, Bartoli M, Ben Hnia W, Mhiri N, Fardeau ML, Bennour F, Kamoun L, Alazard D, Sayadi S
  • journal: Curr Microbiol
  • DOI: 10.1007/s00284-017-1211-4
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition/genetics, DNA, Bacterial/genetics, Geologic Sediments/*microbiology, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sulfur-Reducing Bacteria/classification/genetics/*metabolism
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24839Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28693Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28693)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91318Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401360.1