Name: Xylella taiwanensis PLS229
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133015

Type strain:

Species: Xylella taiwanensis

Strain Designation: PLS229

Culture col. no.: DSM 103350, BCRC 80915, JCM 31187, CFBP 8830

Strain history: C.-C. Su and W.-L. Deng; Dept. of Plant Pathol., Natl. Chung Hsing Univ., Taiwan; PLS229.

NCBI tax ID(s): 1444770 (species)

SI-ID 398436

DSM 103350

Other strains from Xylella taiwanensis

X. taiwanensis JCM 31186

Section

Xylella taiwanensis PLS229 is a mesophilic, Gram-negative, rod-shaped plant pathogen that forms circular colonies and was isolated from leafs with scorch symptoms of the pear cultivar Pyrus pyrifolia cv Hengshan.

colony-forming
Gram-negative
rod-shaped
mesophilic
plant pathogen
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Xylella*
	Species	**Xylella taiwanensis**
	Full Scientific Name (LPSN)	Xylella taiwanensis Su et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25034]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #25034]	Cell length	1.1-3.4 µm

[Ref.: #25034]	Cell width	0.2-0.5 µm

[Ref.: #25034]	Cell shape	rod-shaped

[Ref.: #25034]	Colony size	0.1-0.2 mm
[Ref.: #25034]	Colony color	creamy-white
[Ref.: #25034]	Colony shape	circular
[Ref.: #25034]	Incubation period	14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24803]

Culture medium

BOSEA MEDIUM (DSMZ Medium 1052)

[Ref.: #24803]

Culture medium growth

[Ref.: #24803]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24803]

Culture medium composition

expand / minimize

[Ref.: #24803]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #24803]

Culture medium growth

[Ref.: #24803]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24803]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24803]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #24803]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #25034]	carbenicillin ChEBI	yes	12.5	µg/mL
[Ref.: #25034]	gentamicin ChEBI	yes	80	µg/mL
[Ref.: #25034]	penicillin ChEBI				yes	6.25	µg/mL

	Enzyme	Enzyme activity	EC number
[Ref.: #25034]	amylase	-
[Ref.: #25034]	beta-lactamase	+	3.5.2.6
[Ref.: #25034]	gelatinase	+
[Ref.: #25034]	lipase	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24803]	Sample type/isolated from	leafs with scorch symptoms of the pear cultivar Pyrus pyrifolia cv Hengshan
[Ref.: #24803]	Host species	Pyrus pyrifolia
[Ref.: #24803]	Geographic location (country and/or sea, region)	Houli
[Ref.: #24803]	Country	Taiwan
[Ref.: #24803]	Country ISO 3 Code	TWN
[Ref.: #24803]	Continent	Asia
[Ref.: #24803]	Geographic location	24.3368°/120.7360°

[Ref.: #67770]	Sample type/isolated from	Symptomatic pear cultivar Hengshan (Pyrus pyrifoliae) at Houli
[Ref.: #67770]	Host species	Pyrus pyrifoliae
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24803]	Pathogenicity (plant)	yes
[Ref.: #24803]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Xylella taiwanensis PLS229	GCA_000576405	contig	GenBank	1444770 tax ID
[Ref.: #66792]	Xylella taiwanensis PLS229	GCA_013177435	complete	GenBank	1444770 tax ID	*
[Ref.: #66792]	Xylella taiwanensis strain PLS229	1444770.13	complete	PATRIC	1444770 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Xylella taiwanensis PLS229 NCBI: GCA_013177435.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Xylella taiwanensis PLS229 NCBI: GCA_013177435.1
[Ref.: #69480]	motile	no	81.106	no
[Ref.: #69480]	flagellated	no	97.163	no
[Ref.: #69480]	gram-positive	no	98.294	yes
[Ref.: #69480]	anaerobic	no	98.201	no
[Ref.: #69480]	aerobic	yes	54.208	no
[Ref.: #69480]	halophile	no	94.043	no
[Ref.: #69480]	spore-forming	no	96.161	no
[Ref.: #69480]	glucose-util	yes	81.852	no
[Ref.: #69480]	thermophile	no	96.422	yes
[Ref.: #69480]	glucose-ferment	no	80.525	no

Availability in culture collections External links

[Ref.: #24803]

Culture collection no.

DSM 103350, BCRC 80915, JCM 31187, CFBP 8830

[Ref.: #91289]

SI-ID 398436

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of Xylella taiwanensis and Comparative Analysis of Virulence Gene Content With Xylella fastidiosa.	Weng LW, Lin YC, Su CC, Huang CT, Cho ST, Chen AP, Chou SJ, Tsai CW, Kuo CH	Front Microbiol	10.3389/fmicb.2021.684092	2021	*
Phylogeny	Xylella taiwanensis sp. nov., causing pear leaf scorch disease.	Su CC, Deng WL, Jan FJ, Chang CJ, Huang H, Shih HT, Chen J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001426	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24803

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103350

#25034

C. C. D. Su, W. L.,Jan, F. J.,Chang, C. J.,Huang, H.,Shih, H. T.,Chen, J.: Xylella taiwanensis sp. nov., causing pear leaf scorch disease. IJSEM 66: 4766 - 4771 2016 ( DOI 10.1099/ijsem.0.001426 , PubMed 27530392 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91289

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398436.1 )

* These data were automatically processed and therefore are not curated

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