Name: Nocardiopsis rhizosphaerae DSM 101528
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133016

Type strain:

Species: Nocardiopsis rhizosphaerae

Culture col. no.: DSM 101528, CGMCC 4.7228, KCTC 39673, EGI 80674

Strain history: <- Yongguang Zhang, Xinjiang Inst. of Ecol. and Geography Chinese Academy of Sciences; EGI 80674

NCBI tax ID(s): 1892563 (species)

SI-ID 398920

DSM 101528

Section

Nocardiopsis rhizosphaerae DSM 101528 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from saline-alkaline rhizosphere soil of Halocnermum strobilaceum Bieb.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Nocardiopsidaceae*
	Genus	*Nocardiopsis*
	Species	**Nocardiopsis rhizosphaerae**
	Full Scientific Name (LPSN)	Nocardiopsis rhizosphaerae Zhang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25106]	Gram stain	positive

[Ref.: #25106]	Pigment production	no
[Ref.: #25106]	Pigment name	no Diffusible pigment

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24804]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #24804]

Culture medium growth

[Ref.: #24804]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24804]

Culture medium composition

expand / minimize

[Ref.: #24804]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

[Ref.: #24804]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24804]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24804]	growth	28 °C
[Ref.: #25106]	growth	20-40 °C
[Ref.: #25106]	optimum	30 °C

[Ref.: #24804]	Temperature range	mesophilic
[Ref.: #25106]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25106]			optimum	8.0-9.0
[Ref.: #25106]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25106]

Oxygen tolerance

aerobe

[Ref.: #25106]	Spore description	rod-like spore chains
[Ref.: #25106]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25106]		NaCl		growth	0-20.0	%(w/v)
[Ref.: #25106]		NaCl		optimum	2.0-4.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25106]	adenine ChEBI	-	nitrogen source
[Ref.: #25106]	cellobiose ChEBI	+	carbon source
[Ref.: #25106]	cellulose ChEBI	-	hydrolysis
[Ref.: #25106]	D-arabinose ChEBI	-	carbon source
[Ref.: #25106]	D-fructose ChEBI	-	carbon source
[Ref.: #25106]	D-galactose ChEBI	-	carbon source
[Ref.: #25106]	D-glucose ChEBI	+	carbon source
[Ref.: #25106]	D-mannitol ChEBI	-	carbon source
[Ref.: #25106]	D-mannose ChEBI	+	carbon source
[Ref.: #25106]	D-ribose ChEBI	+	carbon source
[Ref.: #25106]	D-xylose ChEBI	-	carbon source
[Ref.: #25106]	galactitol ChEBI	-	carbon source
[Ref.: #25106]	glycerol ChEBI	+	carbon source
[Ref.: #25106]	glycine ChEBI	-	nitrogen source
[Ref.: #25106]	L-alanine ChEBI	+	nitrogen source
[Ref.: #25106]	L-arabinose ChEBI	-	carbon source
[Ref.: #25106]	L-arginine ChEBI	-	nitrogen source
[Ref.: #25106]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #25106]	L-aspartate ChEBI	+	nitrogen source
[Ref.: #25106]	L-cysteine ChEBI	+	nitrogen source
[Ref.: #25106]	L-glutamate ChEBI	+	nitrogen source
[Ref.: #25106]	L-glutamine ChEBI	-	nitrogen source
[Ref.: #25106]	L-histidine ChEBI	+	nitrogen source
[Ref.: #25106]	L-lysine ChEBI	-	nitrogen source
[Ref.: #25106]	L-methionine ChEBI	-	nitrogen source
[Ref.: #25106]	L-phenylalanine ChEBI	-	nitrogen source
[Ref.: #25106]	L-proline ChEBI	+	nitrogen source
[Ref.: #25106]	L-rhamnose ChEBI	+	carbon source
[Ref.: #25106]	L-serine ChEBI	+	nitrogen source
[Ref.: #25106]	L-threonine ChEBI	+	nitrogen source
[Ref.: #25106]	L-tryptophan ChEBI	-	nitrogen source
[Ref.: #25106]	L-valine ChEBI	+	nitrogen source
[Ref.: #25106]	lactose ChEBI	-	carbon source
[Ref.: #25106]	melibiose ChEBI	+	carbon source
[Ref.: #25106]	myo-inositol ChEBI	-	carbon source
[Ref.: #25106]	nitrate ChEBI	-	reduction
[Ref.: #25106]	raffinose ChEBI	-	carbon source
[Ref.: #25106]	sodium acetate ChEBI	+	carbon source
[Ref.: #25106]	sodium pyruvate ChEBI	+	carbon source
[Ref.: #25106]	sucrose ChEBI	+	carbon source
[Ref.: #25106]	trehalose ChEBI	+	carbon source
[Ref.: #25106]	tween 20 ChEBI	+	hydrolysis
[Ref.: #25106]	tween 40 ChEBI	+	hydrolysis
[Ref.: #25106]	tween 60 ChEBI	+	hydrolysis
[Ref.: #25106]	tween 80 ChEBI	+	hydrolysis
[Ref.: #25106]	xanthine ChEBI	+	nitrogen source
[Ref.: #25106]	xylitol ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #25106]		cytochrome oxidase	-	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24804]	Sample type/isolated from	saline-alkaline rhizosphere soil of Halocnermum strobilaceum (Pall.) Bieb
[Ref.: #24804]	Host species	Halocnermum strobilaceum
[Ref.: #24804]	Geographic location (country and/or sea, region)	Xinjiang, Karamay
[Ref.: #24804]	Country	China
[Ref.: #24804]	Country ISO 3 Code	CHN
[Ref.: #24804]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host Body-Site	#Plant	#Rhizosphere
#Condition	#Alkaline	-
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU992916 (>99% sequence identity) for Nocardiopsis rhizosphaerae subclade from Microbeatlas

Aquatic Samples	12
Soil Samples	27
Animal Samples	95
Plant Samples	5
Total Samples	139

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24804]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24804]	Nocardiopsis rhizosphaerae strain EGI 80674 16S ribosomal RNA gene, partial sequence	KU992916	1527	ENA	1892563 tax ID

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GC-content

70.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

DSM 101528, CGMCC 4.7228, KCTC 39673, EGI 80674

[Ref.: #91290]

SI-ID 398920

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardiopsis rhizosphaerae sp. nov., isolated from rhizosphere soil of Halocnermum strobilaceum (Pall.) Bieb.	Zhang YG, Lu XH, Ding YB, Zhou XK, Wang HF, Guo JW, Liu YH, Duan YQ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001483	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24804

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101528

#25106

Y. G. L. Zhang, X. H.,Ding, Y. B.,Zhou, X. K.,Wang, H. F.,Guo, J. W.,Liu, Y. H.,Duan, Y. Q.,Li, W. J.: Nocardiopsis rhizosphaerae sp. nov., isolated from rhizosphere soil of Halocnermum strobilaceum (Pall.) Bieb. IJSEM 66: 5129 - 5133 2016 ( DOI 10.1099/ijsem.0.001483 , PubMed 27613380 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91290

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398920.1 )

* These data were automatically processed and therefore are not curated

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