Name: Croceicoccus mobilis Ery22
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133014

Type strain:

Species: Croceicoccus mobilis

Strain Designation: Ery22

Culture col. no.: DSM 101481, CGMCC 1.15360

Strain history: <- Y.-H. Wu, Second Inst. Oceanography, State Oceanic Admin., Hangzhou, China; Ery22 <- Y. Liu

NCBI tax ID(s): 1703339 (species)

SI-ID 399056

DSM 101481

Section

Croceicoccus mobilis Ery22 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from deep-sea sediment.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Croceicoccus*
	Species	**Croceicoccus mobilis**
	Full Scientific Name (LPSN)	Croceicoccus mobilis Wu et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25039]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.986

[Ref.: #25039]	Cell length	1.0-1.6 µm

[Ref.: #25039]	Cell width	0.5-0.8 µm

[Ref.: #25039]	Cell shape	rod-shaped

[Ref.: #25039]	Motility	yes

[Ref.: #25039]	Colony size	1.0-2.0 mm
[Ref.: #25039]	Colony color	yellow
[Ref.: #25039]	Colony shape	circular
[Ref.: #25039]	Incubation period	3 days
[Ref.: #25039]	Cultivation medium used	MA agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25039]

Culture medium

MA agar

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Culture medium growth

[Ref.: #24802]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #24802]

Culture medium growth

[Ref.: #24802]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24802]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24802]	growth	30 °C
[Ref.: #25039]	growth	15-45 °C
[Ref.: #25039]	optimum	30-37 °C

[Ref.: #24802]	Temperature range	mesophilic
[Ref.: #25039]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25039]			optimum	7.0-7.5
[Ref.: #25039]			growth	5.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25039]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.978

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25039]		NaCl		growth	0-7.5	%(w/v)
[Ref.: #25039]		NaCl		optimum	5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25039]	adipate ChEBI	-	carbon source
[Ref.: #25039]	adipate ChEBI	-	energy source
[Ref.: #25039]	alpha-lactose ChEBI	-	builds acid from
[Ref.: #25039]	cellobiose ChEBI	+	builds acid from
[Ref.: #25039]	citrate ChEBI	+	carbon source
[Ref.: #25039]	D-fructose ChEBI	+	builds acid from
[Ref.: #25039]	D-galactose ChEBI	-	builds acid from
[Ref.: #25039]	D-glucose ChEBI	+	carbon source
[Ref.: #25039]	D-glucose ChEBI	+	energy source
[Ref.: #25039]	D-mannitol ChEBI	+	carbon source
[Ref.: #25039]	D-mannitol ChEBI	+	energy source
[Ref.: #25039]	D-mannose ChEBI	-	carbon source
[Ref.: #25039]	D-mannose ChEBI	-	energy source
[Ref.: #25039]	D-xylose ChEBI	-	builds acid from
[Ref.: #25039]	decanoate ChEBI	+	carbon source
[Ref.: #25039]	decanoate ChEBI	+	energy source
[Ref.: #25039]	esculin ChEBI	+	hydrolysis
[Ref.: #25039]	ethanol ChEBI	-	builds acid from
[Ref.: #25039]	gelatin ChEBI	-	hydrolysis
[Ref.: #25039]	glucose ChEBI	+	builds acid from
[Ref.: #25039]	L-arabinose ChEBI	-	carbon source
[Ref.: #25039]	L-arabinose ChEBI	-	energy source
[Ref.: #25039]	malate ChEBI	-	carbon source
[Ref.: #25039]	malate ChEBI	-	energy source
[Ref.: #25039]	malate ChEBI	+	energy source
[Ref.: #25039]	malate ChEBI	+	carbon source
[Ref.: #25039]	maltose ChEBI	+	carbon source
[Ref.: #25039]	maltose ChEBI	+	energy source
[Ref.: #25039]	maltose ChEBI	+	builds acid from
[Ref.: #25039]	mannitol ChEBI	+	builds acid from
[Ref.: #25039]	melezitose ChEBI	-	builds acid from
[Ref.: #25039]	myo-inositol ChEBI	-	builds acid from
[Ref.: #25039]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #25039]	N-acetylglucosamine ChEBI	-	energy source
[Ref.: #25039]	nitrate ChEBI	-	reduction
[Ref.: #25039]	peptone	+	carbon source
[Ref.: #25039]	peptone	+	energy source
[Ref.: #25039]	phenylacetate ChEBI	-	carbon source
[Ref.: #25039]	phenylacetate ChEBI	-	energy source
[Ref.: #25039]	potassium gluconate ChEBI	-	carbon source
[Ref.: #25039]	potassium gluconate ChEBI	-	energy source
[Ref.: #25039]	raffinose ChEBI	-	builds acid from
[Ref.: #25039]	ribitol ChEBI	-	builds acid from
[Ref.: #25039]	sodium citrate ChEBI	-	carbon source
[Ref.: #25039]	sodium citrate ChEBI	-	energy source
[Ref.: #25039]	sorbose ChEBI	-	builds acid from
[Ref.: #25039]	starch ChEBI	-	hydrolysis
[Ref.: #25039]	sucrose ChEBI	-	builds acid from
[Ref.: #25039]	trehalose ChEBI	-	builds acid from
[Ref.: #25039]	tryptone	+	carbon source
[Ref.: #25039]	tryptone	+	energy source
[Ref.: #25039]	tryptophan ChEBI	-	energy source
[Ref.: #25039]	tween 20 ChEBI	-	hydrolysis
[Ref.: #25039]	yeast extract	+	carbon source
[Ref.: #25039]	yeast extract	+	energy source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #25039]	ampicillin ChEBI	no	10	µg (disc)
[Ref.: #25039]	cephalexin ChEBI	yes	30	µg (disc)
[Ref.: #25039]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #25039]	erythromycin ChEBI	yes	10	µg (disc)
[Ref.: #25039]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #25039]	nalidixic acid ChEBI				yes	30	µg (disc)
[Ref.: #25039]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #25039]	nitrofurantoin ChEBI	yes	300	µg (disc)
[Ref.: #25039]	novobiocin ChEBI	yes	30	µg (disc)
[Ref.: #25039]	penicillin ChEBI	no	10	Unit (disc)
[Ref.: #25039]	polymyxin b ChEBI				yes	300	Unit (disc)
[Ref.: #25039]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #25039]	streptomycin ChEBI				yes	10	µg (disc)
[Ref.: #25039]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #25039]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25039]		acetoin ChEBI	yes
[Ref.: #25039]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #25039]		acetoin ChEBI	+
[Ref.: #25039]		indole ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #25039]	acid phosphatase	+	3.1.3.2
[Ref.: #25039]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25039]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #25039]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25039]	alpha-glucosidase	+	3.2.1.20
[Ref.: #25039]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25039]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25039]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #25039]	beta-galactosidase	-	3.2.1.23
[Ref.: #25039]	beta-glucosidase	-	3.2.1.21
[Ref.: #25039]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25039]	catalase	+	1.11.1.6
[Ref.: #25039]	cystine arylamidase	+	3.4.11.3
[Ref.: #25039]	esterase (C 4)	-
[Ref.: #25039]	esterase lipase (C 8)	+
[Ref.: #25039]	leucine arylamidase	+	3.4.11.1
[Ref.: #25039]	lipase (C 14)	-
[Ref.: #25039]	lysine decarboxylase	-	4.1.1.18
[Ref.: #25039]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25039]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25039]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #25039]	trypsin	+	3.4.21.4
[Ref.: #25039]	tryptophan deaminase	+	4.1.99.1
[Ref.: #25039]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25039]	urease	+	3.5.1.5
[Ref.: #25039]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24802]	Sample type/isolated from	deep-sea sediment
[Ref.: #24802]	Geographic location (country and/or sea, region)	Indian Ocean, Central Indian Rise (7° 54' 00'' S 84° 8' 24'' E) at a depth of 4735m
[Ref.: #24802]	Geographic location	-7.9000°/84.1400°

[Ref.: #25039]	Sample type/isolated from	deep-sea sediment, depth of 4735 m
[Ref.: #25039]	Geographic location (country and/or sea, region)	Indian Ocean, Central Indian Rise (7° 54' 00'' S 84° 8' 24'' E) at a depth of 4735m
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT383846 (>99% sequence identity) for Croceicoccus mobilis from Microbeatlas

Aquatic Samples	66
Soil Samples	19
Animal Samples	2
Plant Samples	2
Total Samples	89

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24802]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24802]	Croceicoccus mobilis strain Ery22 16S ribosomal RNA gene, complete sequence	KT383846	1477	ENA	1703339 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Croceicoccus mobilis Ery22	GCA_001661965	contig	GenBank	1703339 tax ID	*
[Ref.: #66792]	Croceicoccus mobilis CGMCC 1.15360	GCA_014642595	contig	GenBank	1703339 tax ID	*
[Ref.: #66792]	Croceicoccus mobilis strain CGMCC 1.15360	1703339.6	wgs	PATRIC	1703339 tax ID	*
[Ref.: #66792]	Croceicoccus mobilis Ery22	2890671501	draft	JGI IMG/M	1703339 tax ID	*

[Ref.: #25039]	GC-content	62.5 mol%	genome sequence analysis
[Ref.: #24802]	GC-content	62.5 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Croceicoccus mobilis strain CGMCC 1.15360 PATRIC: 1703339.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Croceicoccus mobilis strain CGMCC 1.15360 PATRIC: 1703339.6
[Ref.: #69480]	motile	yes	55.697	no
[Ref.: #69480]	gram-positive	no	98.047	no
[Ref.: #69480]	anaerobic	no	98.625	no
[Ref.: #69480]	aerobic	yes	93.012	yes
[Ref.: #69480]	halophile	no	83.283	no
[Ref.: #69480]	spore-forming	no	95.972	no
[Ref.: #69480]	thermophile	no	98.874	no
[Ref.: #69480]	glucose-util	yes	90.27	yes
[Ref.: #69480]	flagellated	no	86.123	no
[Ref.: #69480]	glucose-ferment	no	92.65	no

Availability in culture collections External links

[Ref.: #24802]

Culture collection no.

DSM 101481, CGMCC 1.15360

[Ref.: #91288]

SI-ID 399056

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Croceicoccus bisphenolivorans sp. nov., a bisphenol A-degrading bacterium isolated from seawater.	Li J, Hu A, Lv M, Yu CP	Int J Syst Evol Microbiol	10.1099/ijsem.0.004658	2021	*
Phylogeny	Croceicoccus sediminis sp. nov., isolated from coastal sediment.	Huang Z, Zhang A, Lai Q, Yuan J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003823	2020	*
Phylogeny	Croceicoccus pelagius sp. nov. and Croceicoccus mobilis sp. nov., isolated from marine environments.	Wu YH, Li GY, Jian SL, Cheng H, Huo YY, Wang CS, Shao ZZ, Xu XW	Int J Syst Evol Microbiol	10.1099/ijsem.0.001381	2016	*
Phylogeny	Croceicoccus hydrothermalis sp. nov., isolated from shallow-sea hydrothermal system off Kueishantao Island.	Chen B, Ye Y, Lin D, Zhang M, Sun J, Tang K	Int J Syst Evol Microbiol	10.1099/ijsem.0.005472	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24802

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101481

#25039

Y. H. L. Wu, G. Y.,Jian, S. L.,Cheng, H.,Huo, Y. Y.,Wang, C. S.,Shao, Z. Z.,Xu, X. W.: Croceicoccus pelagius sp. nov. and Croceicoccus mobilis sp. nov., isolated from marine environments. IJSEM 66: 4506 - 4511 2016 ( DOI 10.1099/ijsem.0.001381 , PubMed 27503117 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91288

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399056.1 )

* These data were automatically processed and therefore are not curated

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Croceicoccus mobilis strain CGMCC 1.15360

Croceicoccus mobilis strain CGMCC 1.15360

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