Name: Paenibacillus solani FJAT-22460
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133010

Type strain:

Species: Paenibacillus solani

Strain Designation: FJAT-22460

Culture col. no.: DSM 100999, CCTCC AB 2015207

Strain history: <- G. Liu, Fujian Academy of Agricultural Sciences, Fuzhou, China; FJAT-22460

NCBI tax ID(s): 1705565 (species)

SI-ID 402946

DSM 100999

Special Collections

Section

Paenibacillus solani FJAT-22460 is an aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from rhizosphere soil from a potato field.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus solani**
	Full Scientific Name (LPSN)	Paenibacillus solani Liu et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25021]	Gram stain	positive

[Ref.: #25021]	Cell length	1.6-3.3 µm

[Ref.: #25021]	Cell width	0.4-0.7 µm

[Ref.: #25021]	Cell shape	rod-shaped

[Ref.: #25021]	Motility	yes

[Ref.: #25021]	Flagellum arrangement	peritrichous

[Ref.: #25021]	Colony size	1.0-2.0 mm
[Ref.: #25021]	Colony color	pale yellow
[Ref.: #25021]	Colony shape	circular
[Ref.: #25021]	Incubation period	2 days
[Ref.: #25021]	Cultivation medium used	LB medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25021]

Culture medium

LB medium

[Ref.: #25021]

Culture medium growth

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Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #24798]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24798]	growth	30 °C
[Ref.: #25021]	growth	10-40 °C
[Ref.: #25021]	optimum	30 °C

	pH	Kind of pH		pH
[Ref.: #25021]			optimum	7
[Ref.: #25021]			growth	5.0-12.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25021]

Oxygen tolerance

aerobe

[Ref.: #25021]	Spore description	ellipsoidal, terminally in a swollen sporangium
[Ref.: #25021]	Type of spore	endospore
[Ref.: #25021]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %94.843
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25021]		NaCl		growth	0-5.0	%(w/v)
[Ref.: #25021]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25021]	2-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #25021]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #25021]	amygdalin ChEBI	+	builds acid from
[Ref.: #25021]	arbutin ChEBI	+	builds acid from
[Ref.: #25021]	cellobiose ChEBI	-	builds acid from
[Ref.: #25021]	citrate ChEBI	+	carbon source
[Ref.: #25021]	D-arabinose ChEBI	-	builds acid from
[Ref.: #25021]	D-arabitol ChEBI	+	builds acid from
[Ref.: #25021]	D-fucose ChEBI	-	builds acid from
[Ref.: #25021]	D-lyxose ChEBI	-	builds acid from
[Ref.: #25021]	D-tagatose ChEBI	-	builds acid from
[Ref.: #25021]	D-xylose ChEBI	+	builds acid from
[Ref.: #25021]	erythritol ChEBI	-	builds acid from
[Ref.: #25021]	esculin ChEBI	-	builds acid from
[Ref.: #25021]	fructose ChEBI	+	builds acid from
[Ref.: #25021]	galactitol ChEBI	-	builds acid from
[Ref.: #25021]	galactose ChEBI	+	builds acid from
[Ref.: #25021]	gelatin ChEBI	-	hydrolysis
[Ref.: #25021]	gentiobiose ChEBI	+	builds acid from
[Ref.: #25021]	gluconate ChEBI	+	builds acid from
[Ref.: #25021]	glucose ChEBI	+	builds acid from
[Ref.: #25021]	glycerol ChEBI	-	builds acid from
[Ref.: #25021]	glycogen ChEBI	+	builds acid from
[Ref.: #25021]	inulin ChEBI	-	builds acid from
[Ref.: #25021]	L-arabinose ChEBI	+	builds acid from
[Ref.: #25021]	L-arabitol ChEBI	-	builds acid from
[Ref.: #25021]	L-arabitol ChEBI	+	builds acid from
[Ref.: #25021]	L-fucose ChEBI	-	builds acid from
[Ref.: #25021]	L-xylose ChEBI	-	builds acid from
[Ref.: #25021]	lactose ChEBI	+	builds acid from
[Ref.: #25021]	maltose ChEBI	-	builds acid from
[Ref.: #25021]	mannitol ChEBI	+	builds acid from
[Ref.: #25021]	mannose ChEBI	+	builds acid from
[Ref.: #25021]	melezitose ChEBI	-	builds acid from
[Ref.: #25021]	melibiose ChEBI	-	builds acid from
[Ref.: #25021]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #25021]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #25021]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #25021]	myo-inositol ChEBI	-	builds acid from
[Ref.: #25021]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #25021]	nitrate ChEBI	-	reduction
[Ref.: #25021]	raffinose ChEBI	-	builds acid from
[Ref.: #25021]	rhamnose ChEBI	-	builds acid from
[Ref.: #25021]	ribitol ChEBI	-	builds acid from
[Ref.: #25021]	ribose ChEBI	+	builds acid from
[Ref.: #25021]	salicin ChEBI	-	builds acid from
[Ref.: #25021]	sorbitol ChEBI	-	builds acid from
[Ref.: #25021]	sorbose ChEBI	-	builds acid from
[Ref.: #25021]	starch ChEBI	+	builds acid from
[Ref.: #25021]	sucrose ChEBI	+	builds acid from
[Ref.: #25021]	trehalose ChEBI	+	builds acid from
[Ref.: #25021]	tryptophan ChEBI	+	energy source
[Ref.: #25021]	turanose ChEBI	+	builds acid from
[Ref.: #25021]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25021]		acetoin ChEBI	yes
[Ref.: #25021]		indole ChEBI	yes

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #25021]		acetoin ChEBI	+
[Ref.: #25021]		indole ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #25021]	acid phosphatase	-	3.1.3.2
[Ref.: #25021]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25021]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25021]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25021]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25021]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25021]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #25021]	beta-galactosidase	+	3.2.1.23
[Ref.: #25021]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25021]	catalase	+	1.11.1.6
[Ref.: #25021]	chymotrypsin	-	3.4.4.5
[Ref.: #25021]	cystine arylamidase	-	3.4.11.3
[Ref.: #25021]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25021]	esterase (C 4)	+
[Ref.: #25021]	esterase lipase (C 8)	+
[Ref.: #25021]	leucine arylamidase	+	3.4.11.1
[Ref.: #25021]	lipase (C 14)	-
[Ref.: #25021]	lysine decarboxylase	-	4.1.1.18
[Ref.: #25021]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25021]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25021]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #25021]	trypsin	-	3.4.21.4
[Ref.: #25021]	tryptophan deaminase	+	4.1.99.1
[Ref.: #25021]	urease	+	3.5.1.5
[Ref.: #25021]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24798]	Sample type/isolated from	rhizosphere soil from a potato field
[Ref.: #24798]	Geographic location (country and/or sea, region)	Xinjiang province, Yili district, Nilka County (43° 46' 28'' N 82° 35' 1'' E)
[Ref.: #24798]	Country	China
[Ref.: #24798]	Country ISO 3 Code	CHN
[Ref.: #24798]	Continent	Asia
[Ref.: #24798]	Geographic location	43.7744°/82.5836°
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24798]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24798]	Paenibacillus solani strain FJAT-22460 16S ribosomal RNA gene, partial sequence	KM978206	1457	GenBank ENA	1705565 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus solani FJAT-22460	GCA_001277345	scaffold	GenBank ENA	1705565 tax ID	*
[Ref.: #66792]	Paenibacillus solani FJAT-22460	2651869824	draft	JGI IMG/M	1705565 tax ID	*

[Ref.: #25021]	GC-content	50.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #24798]	GC-content	50.09 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus solani FJAT-22460 NCBI: GCA_001277345.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus solani FJAT-22460 NCBI: GCA_001277345.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	64.806	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.906	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	59.768	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	94.843	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.307	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	84.356	no

Availability in culture collections External links

[Ref.: #24798]

Culture collection no.

DSM 100999, CCTCC AB 2015207

[Ref.: #91284]

SI-ID 402946

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus solani sp. nov., isolated from potato rhizosphere soil.	Liu B, Liu GH, Sengonca C, Schumann P, Lan JL, Chen DJ, Cui WD, Lin NQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001378	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24798

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100999

#25021

B. L. Liu, G. H.,Sengonca, C.,Schumann, P.,Lan, J. L.,Chen, D. J.,Cui, W. D.,Lin, N. Q.: Paenibacillus solani sp. nov., isolated from potato rhizosphere soil. IJSEM 66: 4485 - 4491 2016 ( DOI 10.1099/ijsem.0.001378 , PubMed 27498790 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91284

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402946.1 )

* These data were automatically processed and therefore are not curated

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