Strain identifier
BacDive ID: 133010
Type strain:
Species: Paenibacillus solani
Strain Designation: FJAT-22460
Strain history: <- G. Liu, Fujian Academy of Agricultural Sciences, Fuzhou, China; FJAT-22460
NCBI tax ID(s): 1705565 (species)
General
@ref: 24798
BacDive-ID: 133010
DSM-Number: 100999
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, motile, rod-shaped, colony-forming
description: Paenibacillus solani FJAT-22460 is an aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from rhizosphere soil from a potato field.
NCBI tax id
- NCBI tax id: 1705565
- Matching level: species
strain history
- @ref: 24798
- history: <- G. Liu, Fujian Academy of Agricultural Sciences, Fuzhou, China; FJAT-22460
doi: 10.13145/bacdive133010.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus solani
- full scientific name: Paenibacillus solani Liu et al. 2016
@ref: 24798
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus solani
full scientific name: Paenibacillus solani Liu et al. 2016
strain designation: FJAT-22460
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | flagellum arrangement | confidence |
---|---|---|---|---|---|---|---|
25021 | positive | 1.6-3.3 µm | 0.4-0.7 µm | rod-shaped | yes | peritrichous | |
69480 | yes | 96.917 | |||||
69480 | positive | 100 |
colony morphology
- @ref: 25021
- colony size: 1.0-2.0 mm
- colony color: pale yellow
- colony shape: circular
- incubation period: 2 days
- medium used: LB medium
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
25021 | LB medium | yes | ||
24798 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
25021 | positive | growth | 10-40 | |
25021 | positive | optimum | 30 | mesophilic |
24798 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
25021 | positive | growth | 5.0-12.0 | alkaliphile |
25021 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 25021
- oxygen tolerance: aerobe
spore formation
@ref | spore description | type of spore | spore formation | confidence |
---|---|---|---|---|
25021 | ellipsoidal, terminally in a swollen sporangium | endospore | yes | |
69481 | yes | 100 | ||
69480 | yes | 100 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
25021 | NaCl | positive | growth | 0-5.0 %(w/v) |
25021 | NaCl | optimum | 0 %(w/v) |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
25021 | 17426 | 5-dehydro-D-gluconate | - | builds acid from |
25021 | 15963 | ribitol | - | builds acid from |
25021 | 17057 | cellobiose | - | builds acid from |
25021 | 17108 | D-arabinose | - | builds acid from |
25021 | 28847 | D-fucose | - | builds acid from |
25021 | 62318 | D-lyxose | - | builds acid from |
25021 | 28053 | melibiose | - | builds acid from |
25021 | 16443 | D-tagatose | - | builds acid from |
25021 | 17113 | erythritol | - | builds acid from |
25021 | 4853 | esculin | - | builds acid from |
25021 | 16813 | galactitol | - | builds acid from |
25021 | 5291 | gelatin | - | hydrolysis |
25021 | 17754 | glycerol | - | builds acid from |
25021 | 17268 | myo-inositol | - | builds acid from |
25021 | 15443 | inulin | - | builds acid from |
25021 | 18403 | L-arabitol | - | builds acid from |
25021 | 18287 | L-fucose | - | builds acid from |
25021 | 65328 | L-xylose | - | builds acid from |
25021 | 17306 | maltose | - | builds acid from |
25021 | 6731 | melezitose | - | builds acid from |
25021 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
25021 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
25021 | 17632 | nitrate | - | reduction |
25021 | 16634 | raffinose | - | builds acid from |
25021 | 26546 | rhamnose | - | builds acid from |
25021 | 17814 | salicin | - | builds acid from |
25021 | 30911 | sorbitol | - | builds acid from |
25021 | 27922 | sorbose | - | builds acid from |
25021 | 17151 | xylitol | - | builds acid from |
25021 | 16808 | 2-dehydro-D-gluconate | + | builds acid from |
25021 | 27613 | amygdalin | + | builds acid from |
25021 | 18305 | arbutin | + | builds acid from |
25021 | 16947 | citrate | + | carbon source |
25021 | 18333 | D-arabitol | + | builds acid from |
25021 | 65327 | D-xylose | + | builds acid from |
25021 | 28757 | fructose | + | builds acid from |
25021 | 28260 | galactose | + | builds acid from |
25021 | 28066 | gentiobiose | + | builds acid from |
25021 | 24265 | gluconate | + | builds acid from |
25021 | 17234 | glucose | + | builds acid from |
25021 | 28087 | glycogen | + | builds acid from |
25021 | 30849 | L-arabinose | + | builds acid from |
25021 | 18403 | L-arabitol | + | builds acid from |
25021 | 17716 | lactose | + | builds acid from |
25021 | 29864 | mannitol | + | builds acid from |
25021 | 37684 | mannose | + | builds acid from |
25021 | 320061 | methyl alpha-D-glucopyranoside | + | builds acid from |
25021 | 506227 | N-acetylglucosamine | + | builds acid from |
25021 | 33942 | ribose | + | builds acid from |
25021 | 28017 | starch | + | builds acid from |
25021 | 17992 | sucrose | + | builds acid from |
25021 | 27082 | trehalose | + | builds acid from |
25021 | 27897 | tryptophan | + | energy source |
25021 | 32528 | turanose | + | builds acid from |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
25021 | 15688 | acetoin | yes |
25021 | 35581 | indole | yes |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
25021 | 15688 | acetoin | + | |
25021 | 35581 | indole | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
25021 | acid phosphatase | - | 3.1.3.2 |
25021 | alkaline phosphatase | + | 3.1.3.1 |
25021 | alpha-galactosidase | - | 3.2.1.22 |
25021 | alpha-glucosidase | - | 3.2.1.20 |
25021 | alpha-mannosidase | - | 3.2.1.24 |
25021 | arginine dihydrolase | - | 3.5.3.6 |
25021 | beta-D-fucosidase | - | 3.2.1.38 |
25021 | beta-galactosidase | + | 3.2.1.23 |
25021 | beta-glucuronidase | - | 3.2.1.31 |
25021 | catalase | + | 1.11.1.6 |
25021 | chymotrypsin | - | 3.4.4.5 |
25021 | cystine arylamidase | - | 3.4.11.3 |
25021 | cytochrome oxidase | + | 1.9.3.1 |
25021 | esterase (C 4) | + | |
25021 | esterase lipase (C 8) | + | |
25021 | leucine arylamidase | + | 3.4.11.1 |
25021 | lipase (C 14) | - | |
25021 | lysine decarboxylase | - | 4.1.1.18 |
25021 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
25021 | naphthol-AS-BI-phosphohydrolase | + | |
25021 | ornithine decarboxylase | - | 4.1.1.17 |
25021 | trypsin | - | 3.4.21.4 |
25021 | tryptophan deaminase | + | 4.1.99.1 |
25021 | urease | + | 3.5.1.5 |
25021 | valine arylamidase | + |
Isolation, sampling and environmental information
isolation
- @ref: 24798
- sample type: rhizosphere soil from a potato field
- geographic location: Xinjiang province, Yili district, Nilka County (43° 46' 28'' N 82° 35' 1'' E)
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 43.7744
- longitude: 82.5836
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Agriculture | #Field |
#Environmental | #Terrestrial | #Soil |
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Rhizosphere |
Safety information
risk assessment
- @ref: 24798
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24798
- description: Paenibacillus solani strain FJAT-22460 16S ribosomal RNA gene, partial sequence
- accession: KM978206
- length: 1457
- database: ena
- NCBI tax ID: 1705565
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Paenibacillus solani FJAT-22460 | GCA_001277345 | scaffold | ncbi | 1705565 |
66792 | Paenibacillus solani FJAT-22460 | 2651869824 | draft | img | 1705565 |
GC content
@ref | GC-content | method |
---|---|---|
25021 | 50.9 | high performance liquid chromatography (HPLC) |
24798 | 50.09 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | yes | 90.367 | yes |
flagellated | yes | 77.543 | no |
gram-positive | yes | 85.087 | no |
anaerobic | no | 97.736 | yes |
halophile | no | 83.633 | no |
spore-forming | yes | 96.248 | yes |
thermophile | no | 99.413 | yes |
glucose-util | yes | 84.587 | no |
aerobic | yes | 87.679 | yes |
glucose-ferment | no | 85.728 | no |
External links
@ref: 24798
culture collection no.: DSM 100999, CCTCC AB 2015207
straininfo link
- @ref: 91284
- straininfo: 402946
literature
- topic: Phylogeny
- Pubmed-ID: 27498790
- title: Paenibacillus solani sp. nov., isolated from potato rhizosphere soil.
- authors: Liu B, Liu GH, Sengonca C, Schumann P, Lan JL, Chen DJ, Cui WD, Lin NQ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.001378
- year: 2016
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Solanum tuberosum/*microbiology, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
24798 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100999 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100999) | |||
25021 | B. L. Liu, G. H.,Sengonca, C.,Schumann, P.,Lan, J. L.,Chen, D. J.,Cui, W. D.,Lin, N. Q. | Paenibacillus solani sp. nov., isolated from potato rhizosphere soil | 10.1099/ijsem.0.001378 | IJSEM 66: 4485-4491 2016 | 27498790 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
91284 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402946.1 |