Strain identifier

BacDive ID: 133010

Type strain: Yes

Species: Paenibacillus solani

Strain Designation: FJAT-22460

Strain history: <- G. Liu, Fujian Academy of Agricultural Sciences, Fuzhou, China; FJAT-22460

NCBI tax ID(s): 1705565 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24798

BacDive-ID: 133010

DSM-Number: 100999

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, motile, rod-shaped, colony-forming

description: Paenibacillus solani FJAT-22460 is an aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from rhizosphere soil from a potato field.

NCBI tax id

  • NCBI tax id: 1705565
  • Matching level: species

strain history

  • @ref: 24798
  • history: <- G. Liu, Fujian Academy of Agricultural Sciences, Fuzhou, China; FJAT-22460

doi: 10.13145/bacdive133010.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus solani
  • full scientific name: Paenibacillus solani Liu et al. 2016

@ref: 24798

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus solani

full scientific name: Paenibacillus solani Liu et al. 2016

strain designation: FJAT-22460

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangementconfidence
25021positive1.6-3.3 µm0.4-0.7 µmrod-shapedyesperitrichous
69480yes96.917
69480positive100

colony morphology

  • @ref: 25021
  • colony size: 1.0-2.0 mm
  • colony color: pale yellow
  • colony shape: circular
  • incubation period: 2 days
  • medium used: LB medium

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
25021LB mediumyes
24798CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
25021positivegrowth10-40
25021positiveoptimum30mesophilic
24798positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
25021positivegrowth5.0-12.0alkaliphile
25021positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 25021
  • oxygen tolerance: aerobe

spore formation

@refspore descriptiontype of sporespore formationconfidence
25021ellipsoidal, terminally in a swollen sporangiumendosporeyes
69481yes100
69480yes100

halophily

@refsaltgrowthtested relationconcentration
25021NaClpositivegrowth0-5.0 %(w/v)
25021NaCloptimum0 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
25021174265-dehydro-D-gluconate-builds acid from
2502115963ribitol-builds acid from
2502117057cellobiose-builds acid from
2502117108D-arabinose-builds acid from
2502128847D-fucose-builds acid from
2502162318D-lyxose-builds acid from
2502128053melibiose-builds acid from
2502116443D-tagatose-builds acid from
2502117113erythritol-builds acid from
250214853esculin-builds acid from
2502116813galactitol-builds acid from
250215291gelatin-hydrolysis
2502117754glycerol-builds acid from
2502117268myo-inositol-builds acid from
2502115443inulin-builds acid from
2502118403L-arabitol-builds acid from
2502118287L-fucose-builds acid from
2502165328L-xylose-builds acid from
2502117306maltose-builds acid from
250216731melezitose-builds acid from
2502143943methyl alpha-D-mannoside-builds acid from
2502174863methyl beta-D-xylopyranoside-builds acid from
2502117632nitrate-reduction
2502116634raffinose-builds acid from
2502126546rhamnose-builds acid from
2502117814salicin-builds acid from
2502130911sorbitol-builds acid from
2502127922sorbose-builds acid from
2502117151xylitol-builds acid from
25021168082-dehydro-D-gluconate+builds acid from
2502127613amygdalin+builds acid from
2502118305arbutin+builds acid from
2502116947citrate+carbon source
2502118333D-arabitol+builds acid from
2502165327D-xylose+builds acid from
2502128757fructose+builds acid from
2502128260galactose+builds acid from
2502128066gentiobiose+builds acid from
2502124265gluconate+builds acid from
2502117234glucose+builds acid from
2502128087glycogen+builds acid from
2502130849L-arabinose+builds acid from
2502118403L-arabitol+builds acid from
2502117716lactose+builds acid from
2502129864mannitol+builds acid from
2502137684mannose+builds acid from
25021320061methyl alpha-D-glucopyranoside+builds acid from
25021506227N-acetylglucosamine+builds acid from
2502133942ribose+builds acid from
2502128017starch+builds acid from
2502117992sucrose+builds acid from
2502127082trehalose+builds acid from
2502127897tryptophan+energy source
2502132528turanose+builds acid from

metabolite production

@refChebi-IDmetaboliteproduction
2502115688acetoinyes
2502135581indoleyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
2502115688acetoin+
2502135581indole+

enzymes

@refvalueactivityec
25021acid phosphatase-3.1.3.2
25021alkaline phosphatase+3.1.3.1
25021alpha-galactosidase-3.2.1.22
25021alpha-glucosidase-3.2.1.20
25021alpha-mannosidase-3.2.1.24
25021arginine dihydrolase-3.5.3.6
25021beta-D-fucosidase-3.2.1.38
25021beta-galactosidase+3.2.1.23
25021beta-glucuronidase-3.2.1.31
25021catalase+1.11.1.6
25021chymotrypsin-3.4.4.5
25021cystine arylamidase-3.4.11.3
25021cytochrome oxidase+1.9.3.1
25021esterase (C 4)+
25021esterase lipase (C 8)+
25021leucine arylamidase+3.4.11.1
25021lipase (C 14)-
25021lysine decarboxylase-4.1.1.18
25021N-acetyl-beta-glucosaminidase-3.2.1.52
25021naphthol-AS-BI-phosphohydrolase+
25021ornithine decarboxylase-4.1.1.17
25021trypsin-3.4.21.4
25021tryptophan deaminase+4.1.99.1
25021urease+3.5.1.5
25021valine arylamidase+

Isolation, sampling and environmental information

isolation

  • @ref: 24798
  • sample type: rhizosphere soil from a potato field
  • geographic location: Xinjiang province, Yili district, Nilka County (43° 46' 28'' N 82° 35' 1'' E)
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 43.7744
  • longitude: 82.5836

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

Safety information

risk assessment

  • @ref: 24798
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24798
  • description: Paenibacillus solani strain FJAT-22460 16S ribosomal RNA gene, partial sequence
  • accession: KM978206
  • length: 1457
  • database: ena
  • NCBI tax ID: 1705565

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paenibacillus solani FJAT-22460GCA_001277345scaffoldncbi1705565
66792Paenibacillus solani FJAT-224602651869824draftimg1705565

GC content

@refGC-contentmethod
2502150.9high performance liquid chromatography (HPLC)
2479850.09high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileyes90.367yes
flagellatedyes77.543no
gram-positiveyes85.087no
anaerobicno97.736yes
halophileno83.633no
spore-formingyes96.248yes
thermophileno99.413yes
glucose-utilyes84.587no
aerobicyes87.679yes
glucose-fermentno85.728no

External links

@ref: 24798

culture collection no.: DSM 100999, CCTCC AB 2015207

straininfo link

  • @ref: 91284
  • straininfo: 402946

literature

  • topic: Phylogeny
  • Pubmed-ID: 27498790
  • title: Paenibacillus solani sp. nov., isolated from potato rhizosphere soil.
  • authors: Liu B, Liu GH, Sengonca C, Schumann P, Lan JL, Chen DJ, Cui WD, Lin NQ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001378
  • year: 2016
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Solanum tuberosum/*microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24798Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100999Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100999)
25021B. L. Liu, G. H.,Sengonca, C.,Schumann, P.,Lan, J. L.,Chen, D. J.,Cui, W. D.,Lin, N. Q.Paenibacillus solani sp. nov., isolated from potato rhizosphere soil10.1099/ijsem.0.001378IJSEM 66: 4485-4491 201627498790
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91284Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402946.1