Streptomyces hyaluromycini (DSM 100105, NBRC 110483, MB-PO13)

Name: Streptomyces hyaluromycini (DSM 100105, NBRC 110483, MB-PO13)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132567

Type strain

Strain Designation MB-PO13, TP-A0894

Culture col. no. DSM 100105 NBRC 110483 MB-PO13 TP-A0894

NCBI tax ID(s) 1377993

Special Collections DSMZ

Links

Streptomyces hyaluromycini MB-PO13 is a mesophilic prokaryote that was isolated from tunicate Molgula manhattensis.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 399784

NBRC 110483,DSM 100105

@ref 20215

Last LPSN update 2025-12-16 10:01:33

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces hyaluromycini

Full scientific name Streptomyces hyaluromycini Harunari et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.8
125439		91.7

Multimedia

@ref:	24356
multimedia content:	DSM_100105.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_100105.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24356	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24356	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.749
125439	obligate aerobe	97.1

Spore formation

@ref	Spore formation	Confidence
125438		91.065
125439		92.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Tunicata

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
24356	tunicate Molgula manhattensis	Molgula manhattensis	Minato-ku, Tokyo Bay	Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24356	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM221775v1 assembly for Streptomyces hyaluromycini NBRC 110483	scaffold	GCA_002217755	1377993.3	2791355430	1377993	65.97

Genome browser: GCA_002217755

GC content

@ref	GC-content (mol%)	Method
24356	73.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces hyaluromycini NBRC 110483
NCBI: GCA_002217755

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	92.10	no
125439	motility	BacteriaNetⓘ	no	91.70	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces hyaluromycini NBRC 110483
NCBI: GCA_002217755.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.80	no
125438	anaerobic	anaerobicⓘ	no	96.83	no
125438	aerobic	aerobicⓘ	yes	90.75	no
125438	spore-forming	spore-formingⓘ	yes	91.07	no
125438	thermophilic	thermophileⓘ	no	96.50	no
125438	flagellated	motile2+ⓘ	no	87.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Konamycins A and B and Rubromycins CA1 and CA2, Aromatic Polyketides from the Tunicate-Derived Streptomyces hyaluromycini MB-PO13(T).	Harunari E, Imada C, Igarashi Y	J Nat Prod	10.1021/acs.jnatprod.9b00107	2019
Genetics	Draft genome sequence of Streptomyces hyaluromycini MB-PO13(T), a hyaluromycin producer.	Harunari E, Komaki H, Ichikawa N, Hosoyama A, Kimura A, Hamada M, Igarashi Y	Stand Genomic Sci	10.1186/s40793-017-0286-7	2018
Phylogeny	Streptomyces hyaluromycini sp. nov., isolated from a tunicate (Molgula manhattensis).	Harunari E, Hamada M, Shibata C, Tamura T, Komaki H, Imada C, Igarashi Y	J Antibiot (Tokyo)	10.1038/ja.2015.110	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24356	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100105
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces hyaluromycini (DSM 100105, NBRC 110483, MB-PO13)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002217755

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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