Strain identifier
BacDive ID: 132567
Type strain: 
Species: Streptomyces hyaluromycini
Strain Designation: MB-PO13, TP-A0894
Strain history: <- M. Hamada, National Institute of Technology and Evaluation, Chiba, Japan; NBRC 110483 <- C. Imada, Tokyo University of Marine Science and Technology, Japan
NCBI tax ID(s): 1377993 (species)
version 8.1 (current version)
General
@ref: 24356
BacDive-ID: 132567
DSM-Number: 100105
keywords: genome sequence, Bacteria, spore-forming, mesophilic
description: Streptomyces hyaluromycini MB-PO13 is a spore-forming, mesophilic bacterium that was isolated from tunicate Molgula manhattensis.
NCBI tax id
- NCBI tax id: 1377993
- Matching level: species
strain history
- @ref: 24356
- history: <- M. Hamada, National Institute of Technology and Evaluation, Chiba, Japan; NBRC 110483 <- C. Imada, Tokyo University of Marine Science and Technology, Japan
doi: 10.13145/bacdive132567.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces hyaluromycini
- full scientific name: Streptomyces hyaluromycini Harunari et al. 2016
@ref: 24356
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces hyaluromycini
full scientific name: Streptomyces hyaluromycini Harunari et al. 2016
strain designation: MB-PO13, TP-A0894
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 90.769 | |
| 69480 | 100 | positive |
multimedia
- @ref: 24356
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_100105.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 24356
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 24356
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 97 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 24356
- sample type: tunicate Molgula manhattensis
- host species: Molgula manhattensis
- geographic location: Minato-ku, Tokyo Bay
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
- Cat3: #Tunicata
Safety information
risk assessment
- @ref: 24356
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces hyaluromycini NBRC 110483 | GCA_002217755 | scaffold | ncbi | 1377993 |
| 66792 | Streptomyces hyaluromycini strain NBRC 110483 | 1377993.3 | wgs | patric | 1377993 |
| 66792 | Streptomyces hyaluromycini NBRC 110483 | 2791355430 | draft | img | 1377993 |
GC content
- @ref: 24356
- GC-content: 73.6
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 97 | no |
| flagellated | no | 98.095 | no |
| gram-positive | yes | 84.988 | no |
| anaerobic | no | 99.253 | no |
| aerobic | yes | 92.336 | no |
| halophile | no | 95.741 | no |
| spore-forming | yes | 91.912 | no |
| thermophile | no | 98.897 | yes |
| glucose-util | yes | 89.302 | no |
| motile | no | 94.444 | no |
| glucose-ferment | no | 87.743 | no |
External links
@ref: 24356
culture collection no.: DSM 100105, NBRC 110483
straininfo link
- @ref: 90884
- straininfo: 399784
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26531686 | Streptomyces hyaluromycini sp. nov., isolated from a tunicate (Molgula manhattensis). | Harunari E, Hamada M, Shibata C, Tamura T, Komaki H, Imada C, Igarashi Y | J Antibiot (Tokyo) | 10.1038/ja.2015.110 | 2015 | Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Japan, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Urochordata/*microbiology, Vitamin K 2/chemistry | Transcriptome |
| Genetics | 29371910 | Draft genome sequence of Streptomyces hyaluromycini MB-PO13(T), a hyaluromycin producer. | Harunari E, Komaki H, Ichikawa N, Hosoyama A, Kimura A, Hamada M, Igarashi Y | Stand Genomic Sci | 10.1186/s40793-017-0286-7 | 2018 | ||
| Enzymology | 31181919 | Konamycins A and B and Rubromycins CA1 and CA2, Aromatic Polyketides from the Tunicate-Derived Streptomyces hyaluromycini MB-PO13(T). | Harunari E, Imada C, Igarashi Y | J Nat Prod | 10.1021/acs.jnatprod.9b00107 | 2019 | Animals, Gram-Positive Bacteria, Isocoumarins/*chemistry, Magnetic Resonance Spectroscopy, Molecular Structure, Naphthoquinones/isolation & purification/*pharmacology, Polyketides/chemistry/isolation & purification/*pharmacology, Spiro Compounds/*chemistry, Streptomyces/*chemistry, Urochordata/chemistry/*microbiology | Phylogeny |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24356 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100105 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100105) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 90884 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399784.1 |