Name: Alkalicoccus urumqiensis BZ-SZ-XJ18
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132547

Type strain:

Species: Alkalicoccus urumqiensis

Strain Designation: BZ-SZ-XJ18

Culture col. no.: DSM 29145, JCM 30195

Strain history: B. Zhao; Grad. Sch. of Chin. Acad. of Agric. Sci., China; BZ-SZ-XJ18.

NCBI tax ID(s): 1548213 (species)

SI-ID 404443

DSM 29145

Special Collections

Section

When using BacDive for research please cite our paper

Alkalicoccus urumqiensis BZ-SZ-XJ18 is an obligate aerobe, slightly halophilic, Gram-positive bacterium that forms circular colonies and was isolated from saline-alkaline lake, mixture of water and sediment .

colony-forming
Gram-positive
motile
rod-shaped
obligate aerobe
slightly halophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Alkalicoccus*
	Species	**Alkalicoccus urumqiensis**
	Full Scientific Name (LPSN)	Alkalicoccus urumqiensis (Zhang et al. 2016) Gupta et al. 2020

Synonym

Bacillus urumqiensis

Information on morphological and physiological properties Morphology

[Ref.: #43633]	Gram stain	positive

[Ref.: #43633]	Cell length	1.2-2.1 µm

[Ref.: #43633]	Cell width	0.6-0.7 µm

[Ref.: #43633]	Cell shape	rod-shaped

[Ref.: #43633]	Motility	yes

[Ref.: #43633]	Colony size	1-2 mm
[Ref.: #43633]	Colony color	Yellow
[Ref.: #43633]	Colony shape	circular
[Ref.: #43633]	Incubation period	2-3 days
[Ref.: #43633]	Cultivation medium used	Modified solid medium plates

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43633]

Culture medium

Modified solid medium plates

[Ref.: #43633]

Culture medium growth

[Ref.: #24336]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #24336]

Culture medium growth

[Ref.: #24336]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24336]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24336]	growth	35 °C
[Ref.: #43633]	growth	8-41 °C
[Ref.: #43633]	optimum	37 °C
[Ref.: #67770]	growth	35 °C

	pH	Kind of pH		pH
[Ref.: #43633]			optimum	8.5-9.5
[Ref.: #43633]			growth	6.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43633]	Oxygen tolerance	obligate aerobe
[Ref.: #125439]	Oxygen tolerance	aerobe Confidence in %93.9

[Ref.: #43633]	Type of spore	endospore
[Ref.: #43633]	Ability of spore formation	no
[Ref.: #125439]	Ability of spore formation	yes Confidence in %91.4

[Ref.: #43633]	Halophily / tolerance level	slightly halophilic
[Ref.: #43633]	Halophily / tolerance level	moderately halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43633]		NaCl		growth	1.3-25.3	%(w/v)
[Ref.: #43633]		NaCl		optimum	6.3	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43633]	alpha-D-glucose ChEBI	+	builds acid from
[Ref.: #43633]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #43633]	alpha-D-glucose ChEBI	+	energy source
[Ref.: #43633]	alpha-lactose ChEBI	+	builds acid from
[Ref.: #43633]	alpha-lactose ChEBI	+	carbon source
[Ref.: #43633]	alpha-lactose ChEBI	+	energy source
[Ref.: #43633]	casein	+	hydrolysis
[Ref.: #43633]	cellobiose ChEBI	+	builds acid from
[Ref.: #43633]	cellobiose ChEBI	+	carbon source
[Ref.: #43633]	cellobiose ChEBI	+	energy source
[Ref.: #43633]	D-fructose ChEBI	+	builds acid from
[Ref.: #43633]	D-fructose ChEBI	+	carbon source
[Ref.: #43633]	D-fructose ChEBI	+	energy source
[Ref.: #43633]	D-fucose ChEBI	+	builds acid from
[Ref.: #43633]	D-fucose ChEBI	+	carbon source
[Ref.: #43633]	D-fucose ChEBI	+	energy source
[Ref.: #43633]	D-galactose ChEBI	-	builds acid from
[Ref.: #43633]	D-galactose ChEBI	+	carbon source
[Ref.: #43633]	D-galactose ChEBI	+	energy source
[Ref.: #43633]	D-mannose ChEBI	+	builds acid from
[Ref.: #43633]	D-mannose ChEBI	+	carbon source
[Ref.: #43633]	D-mannose ChEBI	+	energy source
[Ref.: #43633]	D-ribose ChEBI	+	builds acid from
[Ref.: #43633]	D-ribose ChEBI	+	carbon source
[Ref.: #43633]	D-ribose ChEBI	+	energy source
[Ref.: #43633]	D-serine ChEBI	+	carbon source
[Ref.: #43633]	D-serine ChEBI	+	energy source
[Ref.: #43633]	D-serine ChEBI	+	nitrogen source
[Ref.: #43633]	D-xylose ChEBI	+	builds acid from
[Ref.: #43633]	D-xylose ChEBI	+	carbon source
[Ref.: #43633]	D-xylose ChEBI	+	energy source
[Ref.: #43633]	fumarate ChEBI	-	growth
[Ref.: #43633]	gamma-aminobutyric acid ChEBI	+	carbon source
[Ref.: #43633]	gamma-aminobutyric acid ChEBI	+	energy source
[Ref.: #43633]	gamma-aminobutyric acid ChEBI	+	nitrogen source
[Ref.: #43633]	gelatin ChEBI	+	hydrolysis
[Ref.: #43633]	glucose ChEBI	-	fermentation
[Ref.: #43633]	glucuronamide ChEBI	+	carbon source
[Ref.: #43633]	glucuronamide ChEBI	+	energy source
[Ref.: #43633]	glucuronamide ChEBI	+	nitrogen source
[Ref.: #43633]	glycine-proline ChEBI	+	carbon source
[Ref.: #43633]	glycine-proline ChEBI	+	energy source
[Ref.: #43633]	glycine-proline ChEBI	+	nitrogen source
[Ref.: #43633]	hippurate ChEBI	-	hydrolysis
[Ref.: #43633]	L-alanine ChEBI	+	carbon source
[Ref.: #43633]	L-alanine ChEBI	+	energy source
[Ref.: #43633]	L-alanine ChEBI	+	nitrogen source
[Ref.: #43633]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43633]	L-arabinose ChEBI	-	carbon source
[Ref.: #43633]	L-arabinose ChEBI	-	energy source
[Ref.: #43633]	L-arginine ChEBI	+	carbon source
[Ref.: #43633]	L-arginine ChEBI	+	energy source
[Ref.: #43633]	L-arginine ChEBI	+	nitrogen source
[Ref.: #43633]	L-aspartate ChEBI	+	carbon source
[Ref.: #43633]	L-aspartate ChEBI	+	energy source
[Ref.: #43633]	L-aspartate ChEBI	+	nitrogen source
[Ref.: #43633]	L-glutamate ChEBI	+	carbon source
[Ref.: #43633]	L-glutamate ChEBI	+	energy source
[Ref.: #43633]	L-glutamate ChEBI	+	nitrogen source
[Ref.: #43633]	L-histidine ChEBI	+	carbon source
[Ref.: #43633]	L-histidine ChEBI	+	energy source
[Ref.: #43633]	L-histidine ChEBI	+	nitrogen source
[Ref.: #43633]	L-pyroglutamic acid ChEBI	+	carbon source
[Ref.: #43633]	L-pyroglutamic acid ChEBI	+	energy source
[Ref.: #43633]	L-pyroglutamic acid ChEBI	+	nitrogen source
[Ref.: #43633]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43633]	L-rhamnose ChEBI	+	carbon source
[Ref.: #43633]	L-rhamnose ChEBI	+	energy source
[Ref.: #43633]	L-serine ChEBI	+	carbon source
[Ref.: #43633]	L-serine ChEBI	+	energy source
[Ref.: #43633]	L-serine ChEBI	+	nitrogen source
[Ref.: #43633]	maltose ChEBI	+	builds acid from
[Ref.: #43633]	maltose ChEBI	+	carbon source
[Ref.: #43633]	maltose ChEBI	+	energy source
[Ref.: #43633]	manganese dioxide	-	growth
[Ref.: #43633]	melezitose ChEBI	+	builds acid from
[Ref.: #43633]	melezitose ChEBI	+	carbon source
[Ref.: #43633]	melezitose ChEBI	+	energy source
[Ref.: #43633]	N-acetyl-beta-D-mannosamine ChEBI	-	carbon source
[Ref.: #43633]	N-acetyl-beta-D-mannosamine ChEBI	-	energy source
[Ref.: #43633]	N-acetyl-beta-D-mannosamine ChEBI	-	nitrogen source
[Ref.: #43633]	N-acetylgalactosamine ChEBI	-	carbon source
[Ref.: #43633]	N-acetylgalactosamine ChEBI	-	energy source
[Ref.: #43633]	N-acetylgalactosamine ChEBI	-	nitrogen source
[Ref.: #43633]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #43633]	N-acetylglucosamine ChEBI	-	energy source
[Ref.: #43633]	N-acetylglucosamine ChEBI	-	nitrogen source
[Ref.: #43633]	nitrate ChEBI	-	reduction
[Ref.: #43633]	nitrite ChEBI	-	reduction
[Ref.: #43633]	raffinose ChEBI	+	builds acid from
[Ref.: #43633]	raffinose ChEBI	+	carbon source
[Ref.: #43633]	raffinose ChEBI	+	energy source
[Ref.: #43633]	sodium nitrate ChEBI	-	growth
[Ref.: #43633]	sodium nitrite ChEBI	-	growth
[Ref.: #43633]	sodium thiosulfate ChEBI	-	growth
[Ref.: #43633]	starch ChEBI	+	hydrolysis
[Ref.: #43633]	sucrose ChEBI	+	builds acid from
[Ref.: #43633]	sucrose ChEBI	+	carbon source
[Ref.: #43633]	sucrose ChEBI	+	energy source
[Ref.: #43633]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43633]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43633]	tyrosine ChEBI	-	degradation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43633]	amoxicillin ChEBI				yes	10	µg (disc)
[Ref.: #43633]	ampicillin ChEBI				yes	50	µg (disc)
[Ref.: #43633]	carbenicillin ChEBI				yes	100	µg (disc)
[Ref.: #43633]	cefalotin ChEBI	yes	30	µg (disc)
[Ref.: #43633]	cefotaxime ChEBI				yes	30	µg (disc)
[Ref.: #43633]	cefoxitin ChEBI	yes	30	µg (disc)
[Ref.: #43633]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43633]	clarithromycin ChEBI	yes	15	µg (disc)
[Ref.: #43633]	clindamycin ChEBI	yes	2	µg (disc)
[Ref.: #43633]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43633]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #43633]	kanamycin ChEBI				yes	50	µg (disc)
[Ref.: #43633]	nalidixic acid ChEBI				yes	30	µg (disc)
[Ref.: #43633]	neomycin ChEBI				yes	30	µg (disc)
[Ref.: #43633]	penicillin ChEBI				yes	10	Unit (disc)
[Ref.: #43633]	polymyxin b ChEBI	yes	300	Unit (disc)
[Ref.: #43633]	rifampicin ChEBI	yes	30	µg (disc)
[Ref.: #43633]	streptomycin ChEBI				yes	300	µg (disc)
[Ref.: #43633]	sulfamethoxazole ChEBI	yes	300	µg (disc)
[Ref.: #43633]	tetracycline ChEBI				yes	30	µg (disc)
[Ref.: #43633]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43633]	acetoin ChEBI	yes
[Ref.: #43633]	hydrogen sulfide ChEBI	no
[Ref.: #43633]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43633]		acetoin ChEBI	+
[Ref.: #43633]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43633]	arginine decarboxylase	-	4.1.1.19
[Ref.: #43633]	catalase	+	1.11.1.6
[Ref.: #43633]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43633]	lysine decarboxylase	+	4.1.1.18
[Ref.: #43633]	ornithine decarboxylase	+	4.1.1.17

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	palmitate biosynthesis	95.45	21 of 22
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	83.33	5 of 6
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	allantoin degradation	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	purine metabolism	75.53	71 of 94
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	methionine metabolism	73.08	19 of 26
[Ref.: #66794]	alanine metabolism	72.41	21 of 29
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	pyrimidine metabolism	71.11	32 of 45
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	degradation of sugar acids	68	17 of 25
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	non-pathway related	65.79	25 of 38
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	oxidative phosphorylation	64.84	59 of 91
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	arginine metabolism	62.5	15 of 24
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	NAD metabolism	61.11	11 of 18
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	degradation of pentoses	60.71	17 of 28
[Ref.: #66794]	tryptophan metabolism	60.53	23 of 38
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	lysine metabolism	50	21 of 42
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	d-mannose degradation	44.44	4 of 9
[Ref.: #66794]	vitamin B12 metabolism	44.12	15 of 34
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	carotenoid biosynthesis	40.91	9 of 22
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	phenol degradation	40	8 of 20
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	38.46	5 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	degradation of sugar alcohols	37.5	6 of 16
[Ref.: #66794]	polyamine pathway	34.78	8 of 23
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	23.53	4 of 17
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
[Ref.: #66794]	chlorophyll metabolism	22.22	4 of 18
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24336]	Sample type/isolated from	saline-alkaline lake, mixture of water and sediment (43° 24' 35'' N, 88° 6' 39'' E, 1072 m elevation)
[Ref.: #24336]	Geographic location (country and/or sea, region)	Xinjiang Uyghur Autonomous Region, close to Urumqi city
[Ref.: #24336]	Country	China
[Ref.: #24336]	Country ISO 3 Code	CHN
[Ref.: #24336]	Continent	Asia
[Ref.: #24336]	Geographic location	43.4097°/88.1108°

[Ref.: #43633]	Sample type/isolated from	a mixture of water and sediment of a saline-alkaline lake close to Urumqi City
[Ref.: #43633]	Geographic location (country and/or sea, region)	Urumqi City, Xinjiang Uyghur Autonomous Region of China
[Ref.: #43633]	Country	China
[Ref.: #43633]	Country ISO 3 Code	CHN
[Ref.: #43633]	Continent	Asia
[Ref.: #43633]	Geographic location	43.4090°/88.1100°

[Ref.: #67770]	Sample type/isolated from	Mixed water and sediment of a saline-alkaline lake
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xinjiang Uyghur Autonomous Region
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sediment
#Condition	#Alkaline	-
#Condition	#Saline	-
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KM066107 (>99% sequence identity) for Bacillaceae from Microbeatlas

Aquatic Samples	11
Soil Samples	2
Animal Samples	33
Plant Samples
Total Samples	46

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24336]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24336]	Alkalicoccus urumqiensis strain BZ-SZ-XJ18 16S ribosomal RNA gene, partial sequence	KM066107	1530	GenBank ENA	1548213 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alkalicoccus urumqiensis BZ-SZ-XJ18	GCA_002993335	scaffold	GenBank ENA	1548213 tax ID

[Ref.: #43633]	GC-content	41.4 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #24336]	GC-content	42.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alkalicoccus urumqiensis BZ-SZ-XJ18 NCBI: GCA_002993335.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	81.009	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.61	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	80.547	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	54.432	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	89.701	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	81.786	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Alkalicoccus urumqiensis BZ-SZ-XJ18 NCBI: GCA_002993335
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	91.4
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	89.5
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	variable	89.6
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	93.9

Availability in culture collections External links

[Ref.: #24336]

Culture collection no.

DSM 29145, JCM 30195

[Ref.: #90872]

SI-ID 404443

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Bacillus urumqiensis BZ-SZ-XJ18(T), a Moderately Haloalkaliphilic Bacterium Isolated from a Saline-Alkaline Lake.	Liao Z, Ren C, Guo X, Yan Y, Li J, Zhao B	Genome Announc	10.1128/genomeA.00460-18	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24336

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29145

#43633

Shanshan Zhang, Zhaojun Li, Yanchun Yan, Chuanlun Zhang, Jun Li, Baisuo Zhao: Bacillus urumqiensis sp. nov., a moderately haloalkaliphilic bacterium isolated from a salt lake. IJSEM 66: 2305 - 2312 2016 ( DOI 10.1099/ijsem.0.001028 , PubMed 26978771 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90872

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404443.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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