Alkalicoccus urumqiensis (DSM 29145, JCM 30195, BZ-SZ-XJ18)

Name: Alkalicoccus urumqiensis (DSM 29145, JCM 30195, BZ-SZ-XJ18)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132547

Type strain

Strain Designation BZ-SZ-XJ18

Culture col. no. DSM 29145 JCM 30195 BZ-SZ-XJ18

NCBI tax ID(s) 1548213

Special Collections DSMZ JCM Literature strains

History DSMZ <- B. Zhao, Graduate School, CAS, Beijing, China; BZ-SZ-XJ18 <- B. Zhao JCM <-- B. Zhao; Grad. Sch. of Chin. Acad. of Agric. Sci., China; BZ-SZ-XJ18.

Links

Alkalicoccus urumqiensis BZ-SZ-XJ18 is an obligate aerobe, slightly halophilic, Gram-positive bacterium that forms circular colonies and was isolated from saline-alkaline lake, mixture of water and sediment .

Gram-positive motile rod-shaped colony-forming obligate aerobe slightly halophilic genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404443

JCM 30195,DSM 29145

@ref 20215

Last LPSN update 2026-05-29 08:37:53

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Alkalicoccus

Species Alkalicoccus urumqiensis

Full scientific name Alkalicoccus urumqiensis (Zhang et al. 2016) Gupta et al. 2020

Synonyms (1)

Bacillus urumqiensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43633	positive	1.2-2.1 µm	0.6-0.7 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43633	1-2 mm	Yellow	circular	2-3 days	Modified solid medium plates

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
43633	Modified solid medium plates
24336	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 60.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24336	positive	growth	35
43633	positive	growth	8-41
43633	positive	optimum	37
67770	positive	growth	35

Culture pH

@ref	Ability	Type	PH	PH range
43633	positive	optimum	8.5-9.5
43633	positive	growth	6.5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43633	obligate aerobe
125439	aerobe	92.438

Spore formation

@ref	Type of spore	Spore formation
43633	endospore

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
43633	slightly halophilic	NaCl	positive	growth	1.3-25.3 %(w/v)
43633	moderately halophilic	NaCl	positive	optimum	6.3 %(w/v)

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43633	17925 ChEBI	alpha-D-glucose	+	builds acid from
43633	17925 ChEBI	alpha-D-glucose	+	carbon source
43633	17925 ChEBI	alpha-D-glucose	+	energy source
43633	36219 ChEBI	alpha-lactose	+	builds acid from
43633	36219 ChEBI	alpha-lactose	+	carbon source
43633	36219 ChEBI	alpha-lactose	+	energy source
43633		casein	+	hydrolysis
43633	17057 ChEBI	cellobiose	+	builds acid from
43633	17057 ChEBI	cellobiose	+	carbon source
43633	17057 ChEBI	cellobiose	+	energy source
43633	15824 ChEBI	D-fructose	+	builds acid from
43633	15824 ChEBI	D-fructose	+	carbon source
43633	15824 ChEBI	D-fructose	+	energy source
43633	28847 ChEBI	D-fucose	+	builds acid from
43633	28847 ChEBI	D-fucose	+	carbon source
43633	28847 ChEBI	D-fucose	+	energy source
43633	12936 ChEBI	D-galactose	-	builds acid from
43633	12936 ChEBI	D-galactose	+	carbon source
43633	12936 ChEBI	D-galactose	+	energy source
43633	16024 ChEBI	D-mannose	+	builds acid from
43633	16024 ChEBI	D-mannose	+	carbon source
43633	16024 ChEBI	D-mannose	+	energy source
43633	16988 ChEBI	D-ribose	+	builds acid from
43633	16988 ChEBI	D-ribose	+	carbon source
43633	16988 ChEBI	D-ribose	+	energy source
43633	16523 ChEBI	D-serine	+	carbon source
43633	16523 ChEBI	D-serine	+	energy source
43633	16523 ChEBI	D-serine	+	nitrogen source
43633	65327 ChEBI	D-xylose	+	builds acid from
43633	65327 ChEBI	D-xylose	+	carbon source
43633	65327 ChEBI	D-xylose	+	energy source
43633	29806 ChEBI	fumarate	-	growth
43633	16865 ChEBI	gamma-aminobutyric acid	+	carbon source
43633	16865 ChEBI	gamma-aminobutyric acid	+	energy source
43633	16865 ChEBI	gamma-aminobutyric acid	+	nitrogen source
43633	5291 ChEBI	gelatin	+	hydrolysis
43633	17234 ChEBI	glucose	-	fermentation
43633	32323 ChEBI	glucuronamide	+	carbon source
43633	32323 ChEBI	glucuronamide	+	energy source
43633	32323 ChEBI	glucuronamide	+	nitrogen source
43633	70744 ChEBI	glycine-proline	+	carbon source
43633	70744 ChEBI	glycine-proline	+	energy source
43633	70744 ChEBI	glycine-proline	+	nitrogen source
43633	606565 ChEBI	hippurate	-	hydrolysis
43633	16977 ChEBI	L-alanine	+	carbon source
43633	16977 ChEBI	L-alanine	+	energy source
43633	16977 ChEBI	L-alanine	+	nitrogen source
43633	30849 ChEBI	L-arabinose	-	builds acid from
43633	30849 ChEBI	L-arabinose	-	carbon source
43633	30849 ChEBI	L-arabinose	-	energy source
43633	16467 ChEBI	L-arginine	+	carbon source
43633	16467 ChEBI	L-arginine	+	energy source
43633	16467 ChEBI	L-arginine	+	nitrogen source
43633	29991 ChEBI	L-aspartate	+	carbon source
43633	29991 ChEBI	L-aspartate	+	energy source
43633	29991 ChEBI	L-aspartate	+	nitrogen source
43633	29985 ChEBI	L-glutamate	+	carbon source
43633	29985 ChEBI	L-glutamate	+	energy source
43633	29985 ChEBI	L-glutamate	+	nitrogen source
43633	15971 ChEBI	L-histidine	+	carbon source
43633	15971 ChEBI	L-histidine	+	energy source
43633	15971 ChEBI	L-histidine	+	nitrogen source
43633	18183 ChEBI	L-pyroglutamic acid	+	carbon source
43633	18183 ChEBI	L-pyroglutamic acid	+	energy source
43633	18183 ChEBI	L-pyroglutamic acid	+	nitrogen source
43633	62345 ChEBI	L-rhamnose	-	builds acid from
43633	62345 ChEBI	L-rhamnose	+	carbon source
43633	62345 ChEBI	L-rhamnose	+	energy source
43633	17115 ChEBI	L-serine	+	carbon source
43633	17115 ChEBI	L-serine	+	energy source
43633	17115 ChEBI	L-serine	+	nitrogen source
43633	17306 ChEBI	maltose	+	builds acid from
43633	17306 ChEBI	maltose	+	carbon source
43633	17306 ChEBI	maltose	+	energy source
43633		manganese dioxide	-	growth
43633	6731 ChEBI	melezitose	+	builds acid from
43633	6731 ChEBI	melezitose	+	carbon source
43633	6731 ChEBI	melezitose	+	energy source
43633	63154 ChEBI	N-acetyl-beta-D-mannosamine	-	carbon source
43633	63154 ChEBI	N-acetyl-beta-D-mannosamine	-	energy source
43633	63154 ChEBI	N-acetyl-beta-D-mannosamine	-	nitrogen source
43633	28037 ChEBI	N-acetylgalactosamine	-	carbon source
43633	28037 ChEBI	N-acetylgalactosamine	-	energy source
43633	28037 ChEBI	N-acetylgalactosamine	-	nitrogen source
43633	506227 ChEBI	N-acetylglucosamine	-	carbon source
43633	506227 ChEBI	N-acetylglucosamine	-	energy source
43633	506227 ChEBI	N-acetylglucosamine	-	nitrogen source
43633	17632 ChEBI	nitrate	-	reduction
43633	16301 ChEBI	nitrite	-	reduction
43633	16634 ChEBI	raffinose	+	builds acid from
43633	16634 ChEBI	raffinose	+	carbon source
43633	16634 ChEBI	raffinose	+	energy source
43633	63005 ChEBI	sodium nitrate	-	growth
43633	78870 ChEBI	sodium nitrite	-	growth
43633	132112 ChEBI	sodium thiosulfate	-	growth
43633	28017 ChEBI	starch	+	hydrolysis
43633	17992 ChEBI	sucrose	+	builds acid from
43633	17992 ChEBI	sucrose	+	carbon source
43633	17992 ChEBI	sucrose	+	energy source
43633	53424 ChEBI	tween 20	-	hydrolysis
43633	53426 ChEBI	tween 80	-	hydrolysis
43633	18186 ChEBI	tyrosine	-	degradation

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.	Sensitivity conc.
43633	2676	amoxicillin	10 µg (disc)
43633	28971	ampicillin	50 µg (disc)
43633	3393	carbenicillin	100 µg (disc)
43633	124991	cefalotin		30 µg (disc)
43633	204928	cefotaxime	30 µg (disc)
43633	209807	cefoxitin		30 µg (disc)
43633	17698	chloramphenicol		30 µg (disc)
43633	3732	clarithromycin		15 µg (disc)
43633	3745	clindamycin		2 µg (disc)
43633	48923	erythromycin		15 µg (disc)
43633	17833	gentamicin	10 µg (disc)
43633	6104	kanamycin	50 µg (disc)
43633	100147	nalidixic acid	30 µg (disc)
43633	7507	neomycin	30 µg (disc)
43633	17334	penicillin	10 Unit (disc)
43633	8309	polymyxin b		300 Unit (disc)
43633	28077	rifampicin		30 µg (disc)
43633	17076	streptomycin	300 µg (disc)
43633	9332	sulfamethoxazole		300 µg (disc)
43633	27902	tetracycline	30 µg (disc)
43633	28001	vancomycin		30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite
43633	15688 ChEBI	acetoin
43633	16136 ChEBI	hydrogen sulfide
43633	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
43633	15688 ChEBI	acetoin	+
43633	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
43633	arginine decarboxylase	-	4.1.1.19
43633	catalase	+	1.11.1.6
43633	cytochrome oxidase	+	1.9.3.1
43633	lysine decarboxylase	+	4.1.1.18
43633	ornithine decarboxylase	+	4.1.1.17

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	formaldehyde oxidation	100	3 of 3
66794	aerobactin biosynthesis	100	1 of 1
66794	aspartate and asparagine metabolism	100	9 of 9
66794	palmitate biosynthesis	95.45	21 of 22
66794	leucine metabolism	92.31	12 of 13
66794	Entner Doudoroff pathway	90	9 of 10
66794	starch degradation	90	9 of 10
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	heme metabolism	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	phenylalanine metabolism	84.62	11 of 13
66794	1,4-dihydroxy-6-naphthoate biosynthesis	83.33	5 of 6
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	pentose phosphate pathway	81.82	9 of 11
66794	cellulose degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	allantoin degradation	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	glycolysis	76.47	13 of 17
66794	purine metabolism	75.53	71 of 94
66794	gluconeogenesis	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	methionine metabolism	73.08	19 of 26
66794	alanine metabolism	72.41	21 of 29
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	pyrimidine metabolism	71.11	32 of 45
66794	propionate fermentation	70	7 of 10
66794	urea cycle	69.23	9 of 13
66794	degradation of sugar acids	68	17 of 25
66794	methane metabolism	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	non-pathway related	65.79	25 of 38
66794	histidine metabolism	65.52	19 of 29
66794	oxidative phosphorylation	64.84	59 of 91
66794	lipid metabolism	64.52	20 of 31
66794	proline metabolism	63.64	7 of 11
66794	d-xylose degradation	63.64	7 of 11
66794	arginine metabolism	62.5	15 of 24
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	NAD metabolism	61.11	11 of 18
66794	cysteine metabolism	61.11	11 of 18
66794	degradation of pentoses	60.71	17 of 28
66794	tryptophan metabolism	60.53	23 of 38
66794	myo-inositol biosynthesis	60	6 of 10
66794	hydrogen production	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	glutathione metabolism	57.14	8 of 14
66794	propanol degradation	57.14	4 of 7
66794	phenylmercury acetate degradation	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	lysine metabolism	50	21 of 42
66794	kanosamine biosynthesis II	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	pantothenate biosynthesis	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	sulfate reduction	46.15	6 of 13
66794	metabolism of disaccharids	45.45	5 of 11
66794	vitamin B6 metabolism	45.45	5 of 11
66794	d-mannose degradation	44.44	4 of 9
66794	vitamin B12 metabolism	44.12	15 of 34
66794	tyrosine metabolism	42.86	6 of 14
66794	ascorbate metabolism	40.91	9 of 22
66794	carotenoid biosynthesis	40.91	9 of 22
66794	coenzyme M biosynthesis	40	4 of 10
66794	glycine betaine biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	phenol degradation	40	8 of 20
66794	degradation of hexoses	38.89	7 of 18
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	degradation of sugar alcohols	37.5	6 of 16
66794	polyamine pathway	34.78	8 of 23
66794	enterobactin biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	lipid A biosynthesis	33.33	3 of 9
66794	arachidonic acid metabolism	33.33	6 of 18
66794	cyanate degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	cholesterol biosynthesis	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	androgen and estrogen metabolism	25	4 of 16
66794	catecholamine biosynthesis	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	chlorophyll metabolism	22.22	4 of 18

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sediment
#Condition	#Alkaline	-
#Condition	#Saline	-
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
24336	saline-alkaline lake, mixture of water and sediment (43° 24' 35'' N, 88° 6' 39'' E, 1072 m elevation)	Xinjiang Uyghur Autonomous Region, close to Urumqi city	China	CHN	Asia	43.4097	88.1108 43.4097/88.1108
43633	a mixture of water and sediment of a saline-alkaline lake close to Urumqi City	Urumqi City, Xinjiang Uyghur Autonomous Region of China	China	CHN	Asia	43.409	88.11 43.409/88.11
67770	Mixed water and sediment of a saline-alkaline lake	Xinjiang Uyghur Autonomous Region	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KM066107 (>99% sequence identity) for Bacillaceae from Microbeatlas

Aquatic Samples	11
Soil Samples	2
Animal Samples	33
Plant Samples	0
Total Samples	46

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24336	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM299333v1 assembly for Alkalicoccus urumqiensis BZ-SZ-XJ18	scaffold	GCA_002993335	1548213.3	8022824719	1548213	70.79

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24336	Alkalicoccus urumqiensis strain BZ-SZ-XJ18 16S ribosomal RNA gene, partial sequence	KM066107	1530		1548213

GC content

@ref	GC-content (mol%)	Method
43633	41.4	thermal denaturation, midpoint method (Tm)
24336	42.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM299333v1 assembly for Alkalicoccus urumqiensis BZ-SZ-XJ18
NCBI: GCA_002993335

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	variable	77.42	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	92.44	no
125439	motility	BacteriaNetⓘ	yes	85.72	no
125439	spore_formation	BacteriaNetⓘ	yes	89.38	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alkalicoccus urumqiensis BZ-SZ-XJ18
NCBI: GCA_002993335.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	81.01	yes
125438	anaerobic	anaerobicⓘ	no	97.61	yes
125438	aerobic	aerobicⓘ	yes	80.55	yes
125438	spore-forming	spore-formingⓘ	yes	54.43	yes
125438	thermophilic	thermophileⓘ	no	89.70	no
125438	flagellated	motile2+ⓘ	yes	81.79	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Bacillus urumqiensis BZ-SZ-XJ18(T), a Moderately Haloalkaliphilic Bacterium Isolated from a Saline-Alkaline Lake.	Liao Z, Ren C, Guo X, Yan Y, Li J, Zhao B	Genome Announc	10.1128/genomeA.00460-18	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24336	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29145
#43633	Shanshan Zhang, Zhaojun Li, Yanchun Yan, Chuanlun Zhang, Jun Li, Baisuo Zhao: Bacillus urumqiensis sp. nov., a moderately haloalkaliphilic bacterium isolated from a salt lake. IJSEM 66: 2305 - 2312 2016 ( DOI 10.1099/ijsem.0.001028 , PubMed 26978771 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alkalicoccus urumqiensis (DSM 29145, JCM 30195, BZ-SZ-XJ18)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002993335

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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