Alkalicoccus urumqiensis BZ-SZ-XJ18 is an obligate aerobe, slightly halophilic, Gram-positive prokaryote that forms circular colonies and was isolated from saline-alkaline lake, mixture of water and sediment .
Gram-positive motile rod-shaped colony-forming obligate aerobe slightly halophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Bacillati |
| Phylum Bacillota |
| Class Bacilli |
| Order Caryophanales |
| Family Bacillaceae |
| Genus Alkalicoccus |
| Species Alkalicoccus urumqiensis |
| Full scientific name Alkalicoccus urumqiensis (Zhang et al. 2016) Gupta et al. 2020 |
| Synonyms (1) |
| @ref | Gram stain | Cell length | Cell width | Cell shape | Motility | |
|---|---|---|---|---|---|---|
| 43633 | positive | 1.2-2.1 µm | 0.6-0.7 µm | rod-shaped |
| @ref | Colony size | Colony color | Colony shape | Incubation period | Medium used | |
|---|---|---|---|---|---|---|
| 43633 | 1-2 mm | Yellow | circular | 2-3 days | Modified solid medium plates |
| 67770 | Observationquinones: MK-7 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 43633 | 17925 ChEBI | alpha-D-glucose | + | builds acid from | |
| 43633 | 17925 ChEBI | alpha-D-glucose | + | carbon source | |
| 43633 | 17925 ChEBI | alpha-D-glucose | + | energy source | |
| 43633 | 36219 ChEBI | alpha-lactose | + | builds acid from | |
| 43633 | 36219 ChEBI | alpha-lactose | + | carbon source | |
| 43633 | 36219 ChEBI | alpha-lactose | + | energy source | |
| 43633 | casein | + | hydrolysis | ||
| 43633 | 17057 ChEBI | cellobiose | + | builds acid from | |
| 43633 | 17057 ChEBI | cellobiose | + | carbon source | |
| 43633 | 17057 ChEBI | cellobiose | + | energy source | |
| 43633 | 15824 ChEBI | D-fructose | + | builds acid from | |
| 43633 | 15824 ChEBI | D-fructose | + | carbon source | |
| 43633 | 15824 ChEBI | D-fructose | + | energy source | |
| 43633 | 28847 ChEBI | D-fucose | + | builds acid from | |
| 43633 | 28847 ChEBI | D-fucose | + | carbon source | |
| 43633 | 28847 ChEBI | D-fucose | + | energy source | |
| 43633 | 12936 ChEBI | D-galactose | - | builds acid from | |
| 43633 | 12936 ChEBI | D-galactose | + | carbon source | |
| 43633 | 12936 ChEBI | D-galactose | + | energy source | |
| 43633 | 16024 ChEBI | D-mannose | + | builds acid from | |
| 43633 | 16024 ChEBI | D-mannose | + | carbon source | |
| 43633 | 16024 ChEBI | D-mannose | + | energy source | |
| 43633 | 16988 ChEBI | D-ribose | + | builds acid from | |
| 43633 | 16988 ChEBI | D-ribose | + | carbon source | |
| 43633 | 16988 ChEBI | D-ribose | + | energy source | |
| 43633 | 16523 ChEBI | D-serine | + | carbon source | |
| 43633 | 16523 ChEBI | D-serine | + | energy source | |
| 43633 | 16523 ChEBI | D-serine | + | nitrogen source | |
| 43633 | 65327 ChEBI | D-xylose | + | builds acid from | |
| 43633 | 65327 ChEBI | D-xylose | + | carbon source | |
| 43633 | 65327 ChEBI | D-xylose | + | energy source | |
| 43633 | 29806 ChEBI | fumarate | - | growth | |
| 43633 | 16865 ChEBI | gamma-aminobutyric acid | + | carbon source | |
| 43633 | 16865 ChEBI | gamma-aminobutyric acid | + | energy source | |
| 43633 | 16865 ChEBI | gamma-aminobutyric acid | + | nitrogen source | |
| 43633 | 5291 ChEBI | gelatin | + | hydrolysis | |
| 43633 | 17234 ChEBI | glucose | - | fermentation | |
| 43633 | 32323 ChEBI | glucuronamide | + | carbon source | |
| 43633 | 32323 ChEBI | glucuronamide | + | energy source | |
| 43633 | 32323 ChEBI | glucuronamide | + | nitrogen source | |
| 43633 | 70744 ChEBI | glycine-proline | + | carbon source | |
| 43633 | 70744 ChEBI | glycine-proline | + | energy source | |
| 43633 | 70744 ChEBI | glycine-proline | + | nitrogen source | |
| 43633 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 43633 | 16977 ChEBI | L-alanine | + | carbon source | |
| 43633 | 16977 ChEBI | L-alanine | + | energy source | |
| 43633 | 16977 ChEBI | L-alanine | + | nitrogen source | |
| 43633 | 30849 ChEBI | L-arabinose | - | builds acid from | |
| 43633 | 30849 ChEBI | L-arabinose | - | carbon source | |
| 43633 | 30849 ChEBI | L-arabinose | - | energy source | |
| 43633 | 16467 ChEBI | L-arginine | + | carbon source | |
| 43633 | 16467 ChEBI | L-arginine | + | energy source | |
| 43633 | 16467 ChEBI | L-arginine | + | nitrogen source | |
| 43633 | 29991 ChEBI | L-aspartate | + | carbon source | |
| 43633 | 29991 ChEBI | L-aspartate | + | energy source | |
| 43633 | 29991 ChEBI | L-aspartate | + | nitrogen source | |
| 43633 | 29985 ChEBI | L-glutamate | + | carbon source | |
| 43633 | 29985 ChEBI | L-glutamate | + | energy source | |
| 43633 | 29985 ChEBI | L-glutamate | + | nitrogen source | |
| 43633 | 15971 ChEBI | L-histidine | + | carbon source | |
| 43633 | 15971 ChEBI | L-histidine | + | energy source | |
| 43633 | 15971 ChEBI | L-histidine | + | nitrogen source | |
| 43633 | 18183 ChEBI | L-pyroglutamic acid | + | carbon source | |
| 43633 | 18183 ChEBI | L-pyroglutamic acid | + | energy source | |
| 43633 | 18183 ChEBI | L-pyroglutamic acid | + | nitrogen source | |
| 43633 | 62345 ChEBI | L-rhamnose | - | builds acid from | |
| 43633 | 62345 ChEBI | L-rhamnose | + | carbon source | |
| 43633 | 62345 ChEBI | L-rhamnose | + | energy source | |
| 43633 | 17115 ChEBI | L-serine | + | carbon source | |
| 43633 | 17115 ChEBI | L-serine | + | energy source | |
| 43633 | 17115 ChEBI | L-serine | + | nitrogen source | |
| 43633 | 17306 ChEBI | maltose | + | builds acid from | |
| 43633 | 17306 ChEBI | maltose | + | carbon source | |
| 43633 | 17306 ChEBI | maltose | + | energy source | |
| 43633 | manganese dioxide | - | growth | ||
| 43633 | 6731 ChEBI | melezitose | + | builds acid from | |
| 43633 | 6731 ChEBI | melezitose | + | carbon source | |
| 43633 | 6731 ChEBI | melezitose | + | energy source | |
| 43633 | 63154 ChEBI | N-acetyl-beta-D-mannosamine | - | carbon source | |
| 43633 | 63154 ChEBI | N-acetyl-beta-D-mannosamine | - | energy source | |
| 43633 | 63154 ChEBI | N-acetyl-beta-D-mannosamine | - | nitrogen source | |
| 43633 | 28037 ChEBI | N-acetylgalactosamine | - | carbon source | |
| 43633 | 28037 ChEBI | N-acetylgalactosamine | - | energy source | |
| 43633 | 28037 ChEBI | N-acetylgalactosamine | - | nitrogen source | |
| 43633 | 506227 ChEBI | N-acetylglucosamine | - | carbon source | |
| 43633 | 506227 ChEBI | N-acetylglucosamine | - | energy source | |
| 43633 | 506227 ChEBI | N-acetylglucosamine | - | nitrogen source | |
| 43633 | 17632 ChEBI | nitrate | - | reduction | |
| 43633 | 16301 ChEBI | nitrite | - | reduction | |
| 43633 | 16634 ChEBI | raffinose | + | builds acid from | |
| 43633 | 16634 ChEBI | raffinose | + | carbon source | |
| 43633 | 16634 ChEBI | raffinose | + | energy source | |
| 43633 | 63005 ChEBI | sodium nitrate | - | growth | |
| 43633 | 78870 ChEBI | sodium nitrite | - | growth | |
| 43633 | 132112 ChEBI | sodium thiosulfate | - | growth | |
| 43633 | 28017 ChEBI | starch | + | hydrolysis | |
| 43633 | 17992 ChEBI | sucrose | + | builds acid from | |
| 43633 | 17992 ChEBI | sucrose | + | carbon source | |
| 43633 | 17992 ChEBI | sucrose | + | energy source | |
| 43633 | 53424 ChEBI | tween 20 | - | hydrolysis | |
| 43633 | 53426 ChEBI | tween 80 | - | hydrolysis | |
| 43633 | 18186 ChEBI | tyrosine | - | degradation |
| @ref | ChEBI | Metabolite | Is antibiotic | Is resistant | Resistance conc. | |
|---|---|---|---|---|---|---|
| 43633 | 2676 | amoxicillin | 10 µg (disc) | |||
| 43633 | 28971 | ampicillin | 50 µg (disc) | |||
| 43633 | 3393 | carbenicillin | 100 µg (disc) | |||
| 43633 | 124991 | cefalotin | ||||
| 43633 | 204928 | cefotaxime | 30 µg (disc) | |||
| 43633 | 209807 | cefoxitin | ||||
| 43633 | 17698 | chloramphenicol | ||||
| 43633 | 3732 | clarithromycin | ||||
| 43633 | 3745 | clindamycin | ||||
| 43633 | 48923 | erythromycin | ||||
| 43633 | 17833 | gentamicin | 10 µg (disc) | |||
| 43633 | 6104 | kanamycin | 50 µg (disc) | |||
| 43633 | 100147 | nalidixic acid | 30 µg (disc) | |||
| 43633 | 7507 | neomycin | 30 µg (disc) | |||
| 43633 | 17334 | penicillin | 10 Unit (disc) | |||
| 43633 | 8309 | polymyxin b | ||||
| 43633 | 28077 | rifampicin | ||||
| 43633 | 17076 | streptomycin | 300 µg (disc) | |||
| 43633 | 9332 | sulfamethoxazole | ||||
| 43633 | 27902 | tetracycline | 30 µg (disc) | |||
| 43633 | 28001 | vancomycin |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | cardiolipin biosynthesis | 100 | 7 of 7 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | threonine metabolism | 100 | 10 of 10 | ||
| 66794 | ethanol fermentation | 100 | 2 of 2 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | aerobactin biosynthesis | 100 | 1 of 1 | ||
| 66794 | aspartate and asparagine metabolism | 100 | 9 of 9 | ||
| 66794 | palmitate biosynthesis | 95.45 | 21 of 22 | ||
| 66794 | leucine metabolism | 92.31 | 12 of 13 | ||
| 66794 | Entner Doudoroff pathway | 90 | 9 of 10 | ||
| 66794 | starch degradation | 90 | 9 of 10 | ||
| 66794 | molybdenum cofactor biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | valine metabolism | 88.89 | 8 of 9 | ||
| 66794 | C4 and CAM-carbon fixation | 87.5 | 7 of 8 | ||
| 66794 | heme metabolism | 85.71 | 12 of 14 | ||
| 66794 | photosynthesis | 85.71 | 12 of 14 | ||
| 66794 | tetrahydrofolate metabolism | 85.71 | 12 of 14 | ||
| 66794 | reductive acetyl coenzyme A pathway | 85.71 | 6 of 7 | ||
| 66794 | vitamin B1 metabolism | 84.62 | 11 of 13 | ||
| 66794 | phenylalanine metabolism | 84.62 | 11 of 13 | ||
| 66794 | 1,4-dihydroxy-6-naphthoate biosynthesis | 83.33 | 5 of 6 | ||
| 66794 | glutamate and glutamine metabolism | 82.14 | 23 of 28 | ||
| 66794 | pentose phosphate pathway | 81.82 | 9 of 11 | ||
| 66794 | cellulose degradation | 80 | 4 of 5 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | glycogen metabolism | 80 | 4 of 5 | ||
| 66794 | flavin biosynthesis | 80 | 12 of 15 | ||
| 66794 | allantoin degradation | 77.78 | 7 of 9 | ||
| 66794 | serine metabolism | 77.78 | 7 of 9 | ||
| 66794 | glycolysis | 76.47 | 13 of 17 | ||
| 66794 | purine metabolism | 75.53 | 71 of 94 | ||
| 66794 | gluconeogenesis | 75 | 6 of 8 | ||
| 66794 | isoleucine metabolism | 75 | 6 of 8 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 75 | 6 of 8 | ||
| 66794 | butanoate fermentation | 75 | 3 of 4 | ||
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | acetate fermentation | 75 | 3 of 4 | ||
| 66794 | methionine metabolism | 73.08 | 19 of 26 | ||
| 66794 | alanine metabolism | 72.41 | 21 of 29 | ||
| 66794 | ubiquinone biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | citric acid cycle | 71.43 | 10 of 14 | ||
| 66794 | pyrimidine metabolism | 71.11 | 32 of 45 | ||
| 66794 | propionate fermentation | 70 | 7 of 10 | ||
| 66794 | urea cycle | 69.23 | 9 of 13 | ||
| 66794 | degradation of sugar acids | 68 | 17 of 25 | ||
| 66794 | methane metabolism | 66.67 | 2 of 3 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | CO2 fixation in Crenarchaeota | 66.67 | 6 of 9 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | selenocysteine biosynthesis | 66.67 | 4 of 6 | ||
| 66794 | non-pathway related | 65.79 | 25 of 38 | ||
| 66794 | histidine metabolism | 65.52 | 19 of 29 | ||
| 66794 | oxidative phosphorylation | 64.84 | 59 of 91 | ||
| 66794 | lipid metabolism | 64.52 | 20 of 31 | ||
| 66794 | proline metabolism | 63.64 | 7 of 11 | ||
| 66794 | d-xylose degradation | 63.64 | 7 of 11 | ||
| 66794 | arginine metabolism | 62.5 | 15 of 24 | ||
| 66794 | dTDPLrhamnose biosynthesis | 62.5 | 5 of 8 | ||
| 66794 | ketogluconate metabolism | 62.5 | 5 of 8 | ||
| 66794 | isoprenoid biosynthesis | 61.54 | 16 of 26 | ||
| 66794 | NAD metabolism | 61.11 | 11 of 18 | ||
| 66794 | cysteine metabolism | 61.11 | 11 of 18 | ||
| 66794 | degradation of pentoses | 60.71 | 17 of 28 | ||
| 66794 | tryptophan metabolism | 60.53 | 23 of 38 | ||
| 66794 | myo-inositol biosynthesis | 60 | 6 of 10 | ||
| 66794 | hydrogen production | 60 | 3 of 5 | ||
| 66794 | metabolism of amino sugars and derivatives | 60 | 3 of 5 | ||
| 66794 | phenylacetate degradation (aerobic) | 60 | 3 of 5 | ||
| 66794 | lipoate biosynthesis | 60 | 3 of 5 | ||
| 66794 | glutathione metabolism | 57.14 | 8 of 14 | ||
| 66794 | propanol degradation | 57.14 | 4 of 7 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 50 | 6 of 12 | ||
| 66794 | lysine metabolism | 50 | 21 of 42 | ||
| 66794 | kanosamine biosynthesis II | 50 | 1 of 2 | ||
| 66794 | glycolate and glyoxylate degradation | 50 | 3 of 6 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | ribulose monophosphate pathway | 50 | 1 of 2 | ||
| 66794 | cis-vaccenate biosynthesis | 50 | 1 of 2 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | sulfate reduction | 46.15 | 6 of 13 | ||
| 66794 | metabolism of disaccharids | 45.45 | 5 of 11 | ||
| 66794 | vitamin B6 metabolism | 45.45 | 5 of 11 | ||
| 66794 | d-mannose degradation | 44.44 | 4 of 9 | ||
| 66794 | vitamin B12 metabolism | 44.12 | 15 of 34 | ||
| 66794 | tyrosine metabolism | 42.86 | 6 of 14 | ||
| 66794 | ascorbate metabolism | 40.91 | 9 of 22 | ||
| 66794 | carotenoid biosynthesis | 40.91 | 9 of 22 | ||
| 66794 | coenzyme M biosynthesis | 40 | 4 of 10 | ||
| 66794 | glycine betaine biosynthesis | 40 | 2 of 5 | ||
| 66794 | gallate degradation | 40 | 2 of 5 | ||
| 66794 | phenol degradation | 40 | 8 of 20 | ||
| 66794 | degradation of hexoses | 38.89 | 7 of 18 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 38.46 | 5 of 13 | ||
| 66794 | phenylpropanoid biosynthesis | 38.46 | 5 of 13 | ||
| 66794 | degradation of sugar alcohols | 37.5 | 6 of 16 | ||
| 66794 | polyamine pathway | 34.78 | 8 of 23 | ||
| 66794 | enterobactin biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | nitrate assimilation | 33.33 | 3 of 9 | ||
| 66794 | lipid A biosynthesis | 33.33 | 3 of 9 | ||
| 66794 | arachidonic acid metabolism | 33.33 | 6 of 18 | ||
| 66794 | cyanate degradation | 33.33 | 1 of 3 | ||
| 66794 | sphingosine metabolism | 33.33 | 2 of 6 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | cholesterol biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | ||
| 66794 | lactate fermentation | 25 | 1 of 4 | ||
| 66794 | toluene degradation | 25 | 1 of 4 | ||
| 66794 | CMP-KDO biosynthesis | 25 | 1 of 4 | ||
| 66794 | androgen and estrogen metabolism | 25 | 4 of 16 | ||
| 66794 | catecholamine biosynthesis | 25 | 1 of 4 | ||
| 66794 | biotin biosynthesis | 25 | 1 of 4 | ||
| 66794 | bile acid biosynthesis, neutral pathway | 23.53 | 4 of 17 | ||
| 66794 | 4-hydroxymandelate degradation | 22.22 | 2 of 9 | ||
| 66794 | chlorophyll metabolism | 22.22 | 4 of 18 |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Environmental | #Terrestrial | #Sediment | |
| #Condition | #Alkaline | - | |
| #Condition | #Saline | - | |
| #Environmental | #Aquatic | #Lake (large) | |
| #Environmental | #Aquatic | #Sediment |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | Latitude | Longitude | |
|---|---|---|---|---|---|---|---|---|
| 24336 | saline-alkaline lake, mixture of water and sediment (43° 24' 35'' N, 88° 6' 39'' E, 1072 m elevation) | Xinjiang Uyghur Autonomous Region, close to Urumqi city | China | CHN | Asia | 43.4097 | 88.1108 43.4097/88.1108 | |
| 43633 | a mixture of water and sediment of a saline-alkaline lake close to Urumqi City | Urumqi City, Xinjiang Uyghur Autonomous Region of China | China | CHN | Asia | 43.409 | 88.11 43.409/88.11 | |
| 67770 | Mixed water and sediment of a saline-alkaline lake | Xinjiang Uyghur Autonomous Region | China | CHN | Asia |
Global distribution of 16S sequence KM066107 (>99% sequence identity) for Bacillaceae from Microbeatlas ![]()
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 24336 | 1 | Risk group (German classification) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM299333v1 assembly for Alkalicoccus urumqiensis BZ-SZ-XJ18 | scaffold | 1548213 | 70.79 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 24336 | Alkalicoccus urumqiensis strain BZ-SZ-XJ18 16S ribosomal RNA gene, partial sequence | KM066107 | 1530 | 1548213 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | yes | 91.40 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 89.50 | no |
| 125439 | gram_stain | BacteriaNetⓘ | variable | 89.60 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 93.90 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 81.01 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 97.61 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 80.55 | yes |
| 125438 | spore-forming | spore-formingⓘ | yes | 54.43 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 89.70 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 81.79 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Draft Genome Sequence of Bacillus urumqiensis BZ-SZ-XJ18(T), a Moderately Haloalkaliphilic Bacterium Isolated from a Saline-Alkaline Lake. | Liao Z, Ren C, Guo X, Yan Y, Li J, Zhao B | Genome Announc | 10.1128/genomeA.00460-18 | 2018 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #24336 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29145 |
| #43633 | Shanshan Zhang, Zhaojun Li, Yanchun Yan, Chuanlun Zhang, Jun Li, Baisuo Zhao: Bacillus urumqiensis sp. nov., a moderately haloalkaliphilic bacterium isolated from a salt lake. IJSEM 66: 2305 - 2312 2016 ( DOI 10.1099/ijsem.0.001028 , PubMed 26978771 ) |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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