Bacillus mesophilus (DSM 101000, CCTCC AB 2015209, SA4)

Name: Bacillus mesophilus (DSM 101000, CCTCC AB 2015209, SA4)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132541

Type strain

Strain Designation SA4

Culture col. no. DSM 101000 CCTCC AB 2015209 SA4

NCBI tax ID(s) 1808955

Special Collections DSMZ

Links

Bacillus mesophilus SA4 is a mesophilic prokaryote that was isolated from soil from an abandoned marine solar saltern.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 402642

DSM 101000

@ref 20215

Last LPSN update 2025-12-16 10:01:32

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Bacillus

Species Bacillus mesophilus

Full scientific name Bacillus mesophilus Zhou et al. 2017

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24330	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24330	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.2

Spore formation

@ref	Spore formation	Confidence
125438		95.029
125439		94.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
24330	soil from an abandoned marine solar saltern	Shandong Province, Wendeng (122° 0' 21.59'' E, 36° 69' 52.82'' N)	China	CHN	Asia	38.6172	122.6 38.6172/122.6

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24330	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1690895v1 assembly for Bacillus mesophilus DSM 101000	contig	GCA_016908955	1808955.6	2901236122	1808955	73.05
66792	ASM1100884v1 assembly for Bacillus mesophilus SA4	contig	GCA_011008845	1808955.3	8034024361	1808955	72.36

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24330	Bacillus mesophilus strain SA4 16S ribosomal RNA gene, partial sequence	KU324461	1501		1808955

GC content

@ref	GC-content (mol%)	Method
24330	42.4	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacillus mesophilus DSM 101000
NCBI: GCA_016908955

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	94.30	no
125439	motility	BacteriaNetⓘ	yes	87.80	no
125439	gram_stain	BacteriaNetⓘ	variable	76.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus mesophilus strain DSM 101000
PATRIC: 1808955.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	72.23	no
125438	anaerobic	anaerobicⓘ	no	90.36	no
125438	spore-forming	spore-formingⓘ	yes	95.03	no
125438	aerobic	aerobicⓘ	yes	66.18	no
125438	thermophilic	thermophileⓘ	no	89.27	no
125438	flagellated	motile2+ⓘ	yes	88.12	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Bacillus pinisoli sp. nov., Isolated from Soil of a Decayed Pine Tree.	Huang Y, Cai H, Qin S, Yang L, Zhou Y, Wu J, Chen X, Jiang M, Jiang Y, Ihsan YN.	Curr Microbiol	10.1007/s00284-022-03130-x	2022
Metabolism	Bacillus mesophilus sp. nov., an alginate-degrading bacterium isolated from a soil sample collected from an abandoned marine solar saltern.	Zhou YX, Liu GH, Liu B, Chen GJ, Du ZJ	Antonie Van Leeuwenhoek	10.1007/s10482-016-0692-7	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24330	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101000
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bacillus mesophilus (DSM 101000, CCTCC AB 2015209, SA4)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016908955

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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