Name: Endozoicomonas ascidiicola KASP37
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132539

Type strain:

Species: Endozoicomonas ascidiicola

Strain Designation: KASP37

Culture col. no.: DSM 100914, LMG 29096

Strain history: <- L. Schreiber, Aarhus Univ., Center of Geomicrobiol., Denmark; KASP37 <- K. U. Kjeldsen, Aarhus University

NCBI tax ID(s): 1698521 (species)

SI-ID 398088

DSM 100914

Special Collections

DSMZ

Other strains from Endozoicomonas ascidiicola

Section

Endozoicomonas ascidiicola KASP37 is a Gram-negative bacterium that was isolated from pharynx tissue of the ascidian Ascidiella scabra.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Endozoicomonadaceae*
	Genus	*Endozoicomonas*
	Species	**Endozoicomonas ascidiicola**
	Full Scientific Name (LPSN)	Endozoicomonas ascidiicola Schreiber et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.994

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24328]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #24328]

Culture medium growth

[Ref.: #24328]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24328]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24328]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %90.952

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24328]	Sample type/isolated from	pharynx tissue of the ascidian Ascidiella scabra
[Ref.: #24328]	Host species	Ascidiella scabra
[Ref.: #24328]	Geographic location (country and/or sea, region)	Gullmarsfjord (58.2658 N, 11.4175 E)
[Ref.: #24328]	Country	Sweden
[Ref.: #24328]	Country ISO 3 Code	SWE
[Ref.: #24328]	Continent	Europe
[Ref.: #24328]	Geographic location	58.2658°/11.4175°
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Tunicata
#Host Body-Site	#Oral cavity and airways	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24328]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24328]	Endozoicomonas ascidiicola strain KASP37 16S ribosomal RNA gene, partial sequence	KT364258	1519	GenBank ENA	1698521 tax ID
[Ref.: #24328]	Endozoicomonas ascidiicola strain KASP37 16S ribosomal RNA gene, partial sequence	KT364259	1521	GenBank ENA	1698521 tax ID
[Ref.: #24328]	Endozoicomonas ascidiicola strain KASP37 16S ribosomal RNA gene, partial sequence	KT364260	1515	GenBank ENA	1698521 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Endozoicomonas ascidiicola KASP37	GCA_001646955	scaffold	GenBank ENA	1698521 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Endozoicomonas ascidiicola KASP37 NCBI: GCA_001646955.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.994	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	89.331	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	61.542	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.952	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.99	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	79.494	no

Availability in culture collections External links

[Ref.: #24328]

Culture collection no.

DSM 100914, LMG 29096

[Ref.: #90865]

SI-ID 398088

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Endozoicomonas ascidiicola sp. nov., isolated from Scandinavian ascidians.	Schreiber L, Kjeldsen KU, Obst M, Funch P, Schramm A	Syst Appl Microbiol	10.1016/j.syapm.2016.05.008	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24328

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100914

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90865

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398088.1 )

* These data were automatically processed and therefore are not curated

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