Name: Endozoicomonas ascidiicola AVMART05
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132538

Type strain:

Species: Endozoicomonas ascidiicola

Strain Designation: AVMART05

Culture col. no.: DSM 100913, LMG 29095

Strain history: <- L. Schreiber, Aarhus University, Center for Geomicrobiology, Denmark; AVMART 05

NCBI tax ID(s): 1698521 (species)

SI-ID 397660

DSM 100913

Other strains from Endozoicomonas ascidiicola

E. ascidiicola KASP37, DSM 100914, LMG 29096

Section

Endozoicomonas ascidiicola AVMART05 is a mesophilic bacterium that was isolated from pharynx tissue of an ascidian .

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Endozoicomonadaceae*
	Genus	*Endozoicomonas*
	Species	**Endozoicomonas ascidiicola**
	Full Scientific Name (LPSN)	Endozoicomonas ascidiicola Schreiber et al. 2016

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24327]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #24327]

Culture medium growth

[Ref.: #24327]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24327]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24327]			growth	25 °C

[Ref.: #24327]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24327]	Sample type/isolated from	pharynx tissue of an ascidian (Ascidiella sp.)
[Ref.: #24327]	Host species	Ascidiella
[Ref.: #24327]	Geographic location (country and/or sea, region)	Gullmarsfjord (58.2658 N, 11.4175 E)
[Ref.: #24327]	Country	Sweden
[Ref.: #24327]	Country ISO 3 Code	SWE
[Ref.: #24327]	Continent	Europe
[Ref.: #24327]	Geographic location	58.2658°/11.4175°
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Tunicata
#Host Body-Site	#Oral cavity and airways	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24327]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24327]	Endozoicomonas ascidiicola strain AVMART05 16S ribosomal RNA gene, partial sequence	KT364255	1515	ENA	1698521 tax ID
[Ref.: #24327]	Endozoicomonas ascidiicola strain AVMART05 16S ribosomal RNA gene, partial sequence	KT364256	1503	ENA	1698521 tax ID
[Ref.: #24327]	Endozoicomonas ascidiicola strain AVMART05 16S ribosomal RNA gene, partial sequence	KT364257	1501	ENA	1698521 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Endozoicomonas ascidiicola AVMART05	GCA_001646945	scaffold	GenBank	1698521 tax ID	*
[Ref.: #66792]	Endozoicomonas ascidiicola AVMART05	2627853506	complete	JGI IMG/M	1698521 tax ID	*

[Ref.: #24327]

GC-content

46.70 mol%

sequence analysis

Availability in culture collections External links

[Ref.: #24327]

Culture collection no.

DSM 100913, LMG 29095

[Ref.: #90864]

SI-ID 397660

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Endozoicomonas ascidiicola sp. nov., isolated from Scandinavian ascidians.	Schreiber L, Kjeldsen KU, Obst M, Funch P, Schramm A	Syst Appl Microbiol	10.1016/j.syapm.2016.05.008	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24327

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100913

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90864

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397660.1 )

* These data were automatically processed and therefore are not curated

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