Strain identifier
BacDive ID: 132539
Type strain: 
Species: Endozoicomonas ascidiicola
Strain Designation: KASP37
Strain history: <- L. Schreiber, Aarhus Univ., Center of Geomicrobiol., Denmark; KASP37 <- K. U. Kjeldsen, Aarhus University
NCBI tax ID(s): 1698521 (species)
version 9.1 (current version)
General
@ref: 24328
BacDive-ID: 132539
DSM-Number: 100914
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Endozoicomonas ascidiicola KASP37 is a Gram-negative bacterium that was isolated from pharynx tissue of the ascidian Ascidiella scabra.
NCBI tax id
- NCBI tax id: 1698521
- Matching level: species
strain history
- @ref: 24328
- history: <- L. Schreiber, Aarhus Univ., Center of Geomicrobiol., Denmark; KASP37 <- K. U. Kjeldsen, Aarhus University
doi: 10.13145/bacdive132539.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Endozoicomonadaceae
- genus: Endozoicomonas
- species: Endozoicomonas ascidiicola
- full scientific name: Endozoicomonas ascidiicola Schreiber et al. 2016
@ref: 24328
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Endozoicomonadaceae
genus: Endozoicomonas
species: Endozoicomonas ascidiicola
full scientific name: Endozoicomonas ascidiicola Schreiber et al. 2016
strain designation: KASP37
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 98.994
Culture and growth conditions
culture medium
- @ref: 24328
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 24328
- growth: positive
- type: growth
- temperature: 25
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 90.952
Isolation, sampling and environmental information
isolation
- @ref: 24328
- sample type: pharynx tissue of the ascidian Ascidiella scabra
- host species: Ascidiella scabra
- geographic location: Gullmarsfjord (58.2658 N, 11.4175 E)
- country: Sweden
- origin.country: SWE
- continent: Europe
- latitude: 58.2658
- longitude: 11.4175
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Invertebrates (Other) | #Tunicata |
| #Host Body-Site | #Oral cavity and airways |
Safety information
risk assessment
- @ref: 24328
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 24328 | Endozoicomonas ascidiicola strain KASP37 16S ribosomal RNA gene, partial sequence | KT364258 | 1519 | nuccore | 1698521 |
| 24328 | Endozoicomonas ascidiicola strain KASP37 16S ribosomal RNA gene, partial sequence | KT364259 | 1521 | nuccore | 1698521 |
| 24328 | Endozoicomonas ascidiicola strain KASP37 16S ribosomal RNA gene, partial sequence | KT364260 | 1515 | nuccore | 1698521 |
Genome sequences
- @ref: 66792
- description: Endozoicomonas ascidiicola KASP37
- accession: GCA_001646955
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1698521
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.994 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 89.331 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 61.542 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.952 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98.99 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 79.494 | no |
External links
@ref: 24328
culture collection no.: DSM 100914, LMG 29096
straininfo link
- @ref: 90865
- straininfo: 398088
literature
- topic: Phylogeny
- Pubmed-ID: 27344411
- title: Description of Endozoicomonas ascidiicola sp. nov., isolated from Scandinavian ascidians.
- authors: Schreiber L, Kjeldsen KU, Obst M, Funch P, Schramm A
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2016.05.008
- year: 2016
- mesh: Animals, Bacterial Typing Techniques, Base Composition, Base Sequence, DNA, Bacterial/genetics, Fatty Acids/analysis, Nucleic Acid Hybridization, *Oceanospirillaceae/classification/genetics/isolation & purification, Phylogeny, RNA, Ribosomal, 16S/*genetics, Sequence Analysis, DNA, Sweden, Urochordata/*microbiology
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24328 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100914 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100914) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90865 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398088.1 |