Name: Magnetospirillum caucaseum SO-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132529

Type strain:

Species: Magnetospirillum caucaseum

Strain Designation: SO-1

Culture col. no.: DSM 28995, VKM B-2936

Strain history: <- M. Dziuba, RAS, Centre Bioengineering, Russia; SO-1 <- M. Dziuba {2012}

NCBI tax ID(s): 1244869 (species)

SI-ID 406403

DSM 28995

Section

Magnetospirillum caucaseum SO-1 is a microaerophile, chemoorganoheterotroph, motile bacterium that was isolated from freshwater sediment from a river.

motile
spiral-shaped
chemoorganoheterotroph
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Rhodospirillaceae*
	Genus	*Magnetospirillum*
	Species	**Magnetospirillum caucaseum**
	Full Scientific Name (LPSN)	Magnetospirillum caucaseum Dziuba et al. 2016

Synonym

Paramagnetospirillum caucaseum

Information on morphological and physiological properties Morphology

[Ref.: #43653]	Cell length	1.2-3 µm

[Ref.: #43653]	Cell width	0.3 µm

[Ref.: #43653]	Cell shape	spiral-shaped

[Ref.: #43653]	Motility	yes

[Ref.: #43653]	Flagellum arrangement	lophotrichous

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24318]

Culture medium

MAGNETOSPIRILLUM MEDIUM (DSMZ Medium 380)

[Ref.: #24318]

Culture medium growth

[Ref.: #24318]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24318]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24318]	growth	28 °C
[Ref.: #43653]	growth	18-42 °C
[Ref.: #43653]	optimum	28-30 °C

[Ref.: #24318]	Temperature range	mesophilic
[Ref.: #43653]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43653]			optimum	6.5-6.8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43653]

Oxygen tolerance

microaerophile

[Ref.: #43653]

Nutrition type

chemoorganoheterotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43653]		NaCl		growth	0-1	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43653]	butyrate ChEBI	+	growth
[Ref.: #43653]	citrate ChEBI	-	assimilation
[Ref.: #43653]	ethanol ChEBI	-	assimilation
[Ref.: #43653]	glycerol ChEBI	+	growth
[Ref.: #43653]	methanol ChEBI	-	assimilation
[Ref.: #43653]	propionate ChEBI	+	growth
[Ref.: #43653]	tartrate ChEBI	+	growth

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #43653]		catalase	-	1.11.1.6
[Ref.: #43653]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24318]	Sample type/isolated from	freshwater sediment from a river
[Ref.: #24318]	Geographic location (country and/or sea, region)	Caucasus, Kislovodsk, Ol’khovka river
[Ref.: #24318]	Country	Russia
[Ref.: #24318]	Country ISO 3 Code	RUS
[Ref.: #24318]	Continent	Europe
[Ref.: #24318]	Geographic location	43.8941°/42.7209°

[Ref.: #43653]	Sample type/isolated from	a sediment sample from the Ol'khovka river
[Ref.: #43653]	Geographic location (country and/or sea, region)	Kislovodsk, Caucasus
[Ref.: #43653]	Country	Russia
[Ref.: #43653]	Country ISO 3 Code	RUS
[Ref.: #43653]	Continent	Europe
[Ref.: #43653]	Geographic location	43.8940°/42.7200°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#River (Creek)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX502622 (>99% sequence identity) for Magnetospirillum from Microbeatlas

Aquatic Samples	6745
Soil Samples	1907
Animal Samples	813
Plant Samples	1062
Total Samples	10527

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24318]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24318]	Magnetospirillum caucaseum strain SO-1 16S ribosomal RNA gene, complete sequence	JX502622	1440	ENA	1244869 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Magnetospirillum caucaseum SO-1	GCA_000342045	contig	GenBank	1244869 tax ID	*
[Ref.: #66792]	Magnetospirillum caucaseum SO-1	2534681903	draft	JGI IMG/M	1244869 tax ID	*

[Ref.: #43653]	GC-content	65.9 mol%	genome sequence analysis
[Ref.: #24318]	GC-content	65.9 mol%	sequence analysis

Availability in culture collections External links

[Ref.: #24318]

Culture collection no.

DSM 28995, VKM B-2936

[Ref.: #90855]

SI-ID 406403

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Magnetospirillum caucaseum sp. nov., Magnetospirillum marisnigri sp. nov. and Magnetospirillum moscoviense sp. nov., freshwater magnetotactic bacteria isolated from three distinct geographical locations in European Russia.	Dziuba M, Koziaeva V, Grouzdev D, Burganskaya E, Baslerov R, Kolganova T, Chernyadyev A, Osipov G, Andrianova E, Gorlenko V, Kuznetsov B	Int J Syst Evol Microbiol	10.1099/ijsem.0.000994	2016	*
	Magnetic Properties of Bacterial Magnetosomes Produced by Magnetospirillum caucaseum SO-1.	Gareev KG, Grouzdev DS, Kharitonskii PV, Kirilenko DA, Kosterov A, Koziaeva VV, Levitskii VS, Multhoff G, Nepomnyashchaya EK, Nikitin AV, Nikitina A, Sergienko ES, Sukharzhevskii SM, Terukov EI, Trushlyakova VV, Shevtsov M	Microorganisms	10.3390/microorganisms9091854	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24318

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28995

#43653

Marina Dziuba, Veronika Koziaeva, Denis Grouzdev, Ekaterina Burganskaya, Roman Baslerov, Tatjana Kolganova, Alexander Chernyadyev, Georgy Osipov, Ekaterina Andrianova, Vladimir Gorlenko, Boris Kuznetsov: Magnetospirillum caucaseum sp. nov., Magnetospirillum marisnigri sp. nov. and Magnetospirillum moscoviense sp. nov., freshwater magnetotactic bacteria isolated from three distinct geographical locations in European Russia. IJSEM 66: 2069 - 2077 2016 ( DOI 10.1099/ijsem.0.000994 , PubMed 26921147 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90855

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406403.1 )

* These data were automatically processed and therefore are not curated

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