Strain identifier
BacDive ID: 132529
Type strain: 
Species: Magnetospirillum caucaseum
Strain Designation: SO-1
Strain history: <- M. Dziuba, RAS, Centre Bioengineering, Russia; SO-1 <- M. Dziuba {2012}
NCBI tax ID(s): 1244869 (species)
version 8.1 (current version)
General
@ref: 24318
BacDive-ID: 132529
DSM-Number: 28995
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, chemoorganoheterotroph, motile, spiral-shaped
description: Magnetospirillum caucaseum SO-1 is a microaerophile, chemoorganoheterotroph, motile bacterium that was isolated from freshwater sediment from a river.
NCBI tax id
- NCBI tax id: 1244869
- Matching level: species
strain history
- @ref: 24318
- history: <- M. Dziuba, RAS, Centre Bioengineering, Russia; SO-1 <- M. Dziuba {2012}
doi: 10.13145/bacdive132529.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Rhodospirillaceae
- genus: Magnetospirillum
- species: Magnetospirillum caucaseum
- full scientific name: Magnetospirillum caucaseum Dziuba et al. 2016
synonyms
- @ref: 20215
- synonym: Paramagnetospirillum caucaseum
@ref: 24318
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Rhodospirillaceae
genus: Magnetospirillum
species: Magnetospirillum caucaseum
full scientific name: Magnetospirillum caucaseum Dziuba et al. 2016
strain designation: SO-1
type strain: yes
Morphology
cell morphology
- @ref: 43653
- cell length: 1.2-3 µm
- cell width: 0.3 µm
- cell shape: spiral-shaped
- motility: yes
- flagellum arrangement: lophotrichous
Culture and growth conditions
culture medium
- @ref: 24318
- name: MAGNETOSPIRILLUM MEDIUM (DSMZ Medium 380)
- growth: yes
- link: https://mediadive.dsmz.de/medium/380
- composition: Name: MAGNETOSPIRILLUM MEDIUM (DSMZ Medium 380) Composition: Agar 1.3 g/l (optional) KH2PO4 0.68 g/l L(+)-Tartaric acid 0.37 g/l Succinic acid 0.37 g/l NaNO3 0.12 g/l Yeast extract 0.1 g/l Na-thioglycolate 0.05 g/l Na-acetate 0.05 g/l MgSO4 x 7 H2O 0.015 g/l FeCl3 x 6 H2O 0.009 g/l Nitrilotriacetic acid 0.0075 g/l NaCl 0.005 g/l Quinic acid 0.0038 g/l MnSO4 x H2O 0.0025 g/l CoSO4 x 7 H2O 0.0009 g/l ZnSO4 x 7 H2O 0.0009 g/l FeSO4 x 7 H2O 0.0005 g/l Sodium resazurin 0.0005 g/l CaCl2 x 2 H2O 0.0005 g/l Pyridoxine hydrochloride 0.0003 g/l Thiamine-HCl x 2 H2O 0.0002 g/l Nicotinic acid 0.0002 g/l NiCl2 x 6 H2O 0.00015 g/l AlK(SO4)2 x 12 H2O 0.0001 g/l Calcium pantothenate 0.0001 g/l Vitamin B12 0.0001 g/l p-Aminobenzoic acid 8e-05 g/l CuSO4 x 5 H2O 5e-05 g/l Na2MoO4 x 2 H2O 5e-05 g/l H3BO3 5e-05 g/l D-(+)-biotin 2e-05 g/l Na2WO4 x 2 H2O 2e-06 g/l Na2SeO3 x 5 H2O 1.5e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 43653 | positive | growth | 18-42 | |
| 43653 | positive | optimum | 28-30 | mesophilic |
| 24318 | positive | growth | 28 | mesophilic |
culture pH
- @ref: 43653
- ability: positive
- type: optimum
- pH: 6.5-6.8
Physiology and metabolism
oxygen tolerance
- @ref: 43653
- oxygen tolerance: microaerophile
nutrition type
- @ref: 43653
- type: chemoorganoheterotroph
halophily
- @ref: 43653
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-1 %(w/v)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 43653 | 16947 | citrate | - | assimilation |
| 43653 | 16236 | ethanol | - | assimilation |
| 43653 | 17790 | methanol | - | assimilation |
| 43653 | 17968 | butyrate | + | growth |
| 43653 | 17754 | glycerol | + | growth |
| 43653 | 17272 | propionate | + | growth |
| 43653 | 30929 | tartrate | + | growth |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 43653 | cytochrome oxidase | + | 1.9.3.1 |
| 43653 | catalase | - | 1.11.1.6 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 24318 | freshwater sediment from a river | Caucasus, Kislovodsk, Ol’khovka river | Russia | RUS | Europe | 43.8941 | 42.7209 |
| 43653 | a sediment sample from the Ol'khovka river | Kislovodsk, Caucasus | Russia | RUS | Europe | 43.894 | 42.72 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Aquatic | #River (Creek) |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_1353.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_215;96_782;97_911;98_1068;99_1353&stattab=map
- Last taxonomy: Magnetospirillum
- 16S sequence: JX502622
- Sequence Identity:
- Total samples: 10527
- soil counts: 1907
- aquatic counts: 6745
- animal counts: 813
- plant counts: 1062
Safety information
risk assessment
- @ref: 24318
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24318
- description: Magnetospirillum caucaseum strain SO-1 16S ribosomal RNA gene, complete sequence
- accession: JX502622
- length: 1440
- database: ena
- NCBI tax ID: 1244869
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Magnetospirillum caucaseum SO-1 | GCA_000342045 | contig | ncbi | 1244869 |
| 66792 | Magnetospirillum caucaseum SO-1 | 2534681903 | draft | img | 1244869 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 43653 | 65.9 | genome sequence analysis |
| 24318 | 65.9 | sequence analysis |
External links
@ref: 24318
culture collection no.: DSM 28995, VKM B-2936
straininfo link
- @ref: 90855
- straininfo: 406403
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26921147 | Magnetospirillum caucaseum sp. nov., Magnetospirillum marisnigri sp. nov. and Magnetospirillum moscoviense sp. nov., freshwater magnetotactic bacteria isolated from three distinct geographical locations in European Russia. | Dziuba M, Koziaeva V, Grouzdev D, Burganskaya E, Baslerov R, Kolganova T, Chernyadyev A, Osipov G, Andrianova E, Gorlenko V, Kuznetsov B | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000994 | 2016 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/*microbiology, Geologic Sediments/*microbiology, Magnetosomes, Magnetospirillum/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA | Transcriptome |
| 34576748 | Magnetic Properties of Bacterial Magnetosomes Produced by Magnetospirillum caucaseum SO-1. | Gareev KG, Grouzdev DS, Kharitonskii PV, Kirilenko DA, Kosterov A, Koziaeva VV, Levitskii VS, Multhoff G, Nepomnyashchaya EK, Nikitin AV, Nikitina A, Sergienko ES, Sukharzhevskii SM, Terukov EI, Trushlyakova VV, Shevtsov M | Microorganisms | 10.3390/microorganisms9091854 | 2021 |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 24318 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28995 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28995) | |||
| 43653 | Marina Dziuba, Veronika Koziaeva, Denis Grouzdev, Ekaterina Burganskaya, Roman Baslerov, Tatjana Kolganova, Alexander Chernyadyev, Georgy Osipov, Ekaterina Andrianova, Vladimir Gorlenko, Boris Kuznetsov | Magnetospirillum caucaseum sp. nov., Magnetospirillum marisnigri sp. nov. and Magnetospirillum moscoviense sp. nov., freshwater magnetotactic bacteria isolated from three distinct geographical locations in European Russia | 10.1099/ijsem.0.000994 | IJSEM 66: 2069-2077 2016 | 26921147 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 90855 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406403.1 |