Nesterenkonia aurantiaca (DSM 27373, JCM 19723, CK5)

Name: Nesterenkonia aurantiaca (DSM 27373, JCM 19723, CK5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132446

Type strain

Strain Designation CK5

Culture col. no. DSM 27373 JCM 19723 CK5 CIP 110620

NCBI tax ID(s) 1436010

Special Collections DSMZ JCM Literature strains CIP

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Nesterenkonia aurantiaca CK5 is an aerobe, Gram-positive, coccus-shaped prokaryote that forms circular colonies and was isolated from soil.

Gram-positive coccus-shaped colony-forming aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 406146

JCM 19723,DSM 27373

@ref 20215

Last LPSN update 2025-12-16 10:01:31

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Nesterenkonia

Species Nesterenkonia aurantiaca

Full scientific name Nesterenkonia aurantiaca Finore et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape
43734	positive	1.5 µm	coccus-shaped
125438
125438	positive
116553	positive		coccus-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43734	1 mm	Orange	circular	2 days	Solid medium A

Culture and growth conditions

Culture medium

@ref	Name	Growth
43734	Solid medium A
24235	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
24235	HORIKOSHI-1 MEDIUM (DSMZ Medium 1081)
116553	CIP Medium 13

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24235	positive	growth	25	mesophilic
43734	positive	growth	4-30
43734	positive	optimum	25	mesophilic
67770	positive	growth	25	mesophilic

Culture pH

@ref	Ability	Type	PH
43734	positive	optimum	9
43734	positive	growth	6.5-10

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43734	aerobe
125439	obligate aerobe

Spore formation

@ref	Type of spore	Spore formation
43734	endospore
125439

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43734	NaCl	positive	growth	0.003-20 %(w/v)
43734	NaCl	positive	optimum	2 %(w/v)

Observation

67770

Observationquinones: MK-7, MK-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43734	30089 ChEBI	acetate	+	assimilation
43734	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
43734		casein	-	hydrolysis
43734	16947 ChEBI	citrate	+	assimilation
43734	15824 ChEBI	D-fructose	-	builds acid from
43734	15824 ChEBI	D-fructose	+	carbon source
43734	15824 ChEBI	D-fructose	+	energy source
43734	17634 ChEBI	D-glucose	-	builds acid from
43734	17634 ChEBI	D-glucose	+	carbon source
43734	17634 ChEBI	D-glucose	+	energy source
43734	16024 ChEBI	D-mannose	-	assimilation
43734	65327 ChEBI	D-xylose	-	builds acid from
43734	65327 ChEBI	D-xylose	+	carbon source
43734	65327 ChEBI	D-xylose	+	energy source
43734	15740 ChEBI	formate	-	assimilation
43734	29806 ChEBI	fumarate	-	assimilation
43734	28260 ChEBI	galactose	-	builds acid from
43734	28260 ChEBI	galactose	+	carbon source
43734	28260 ChEBI	galactose	+	energy source
43734	5291 ChEBI	gelatin	-	hydrolysis
43734	24265 ChEBI	gluconate	-	assimilation
43734	606565 ChEBI	hippurate	-	hydrolysis
43734	16977 ChEBI	L-alanine	+	energy source
43734	16977 ChEBI	L-alanine	+	nitrogen source
43734	30849 ChEBI	L-arabinose	-	assimilation
43734	17561 ChEBI	L-cysteine	-	energy source
43734	17561 ChEBI	L-cysteine	-	nitrogen source
43734	15971 ChEBI	L-histidine	-	energy source
43734	15971 ChEBI	L-histidine	-	nitrogen source
43734	17191 ChEBI	L-isoleucine	-	energy source
43734	17191 ChEBI	L-isoleucine	-	nitrogen source
43734	18019 ChEBI	L-lysine	-	energy source
43734	18019 ChEBI	L-lysine	-	nitrogen source
43734	16643 ChEBI	L-methionine	-	energy source
43734	16643 ChEBI	L-methionine	-	nitrogen source
43734	17115 ChEBI	L-serine	-	energy source
43734	17115 ChEBI	L-serine	-	nitrogen source
43734	16414 ChEBI	L-valine	-	energy source
43734	16414 ChEBI	L-valine	-	nitrogen source
43734	17716 ChEBI	lactose	-	builds acid from
43734	17716 ChEBI	lactose	+	carbon source
43734	17716 ChEBI	lactose	+	energy source
43734	15792 ChEBI	malonate	+	assimilation
43734	17632 ChEBI	nitrate	-	reduction
43734	16301 ChEBI	nitrite	-	reduction
43734	17309 ChEBI	pectin	+	hydrolysis
43734	28044 ChEBI	phenylalanine	-	hydrolysis
43734	17272 ChEBI	propionate	+	assimilation
43734	16634 ChEBI	raffinose	-	assimilation
43734	28017 ChEBI	starch	-	hydrolysis
43734	30031 ChEBI	succinate	+	assimilation
43734	17992 ChEBI	sucrose	-	builds acid from
43734	17992 ChEBI	sucrose	+	carbon source
43734	17992 ChEBI	sucrose	+	energy source
43734	27082 ChEBI	trehalose	-	builds acid from
43734	27082 ChEBI	trehalose	+	carbon source
43734	27082 ChEBI	trehalose	+	energy source
43734	53426 ChEBI	tween 80	-	hydrolysis
43734	16199 ChEBI	urea	-	hydrolysis
43734	37166 ChEBI	xylan	+	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
43734	28669	bacitracin	10 Unit (disc)
43734	17698	chloramphenicol	10 µg (disc)
43734	71321	fusidate	10 µg (disc)
43734	6472	lincomycin	15 µg (disc)
43734	28368	novobiocin	30 µg (disc)
43734	7660	nystatin	100 Unit (disc)
43734	17334	penicillin	2 Unit (disc)
43734	17076	streptomycin	25 µg (disc)
43734	27902	tetracycline	30 µg (disc)
43734	28001	vancomycin	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43734	15688 ChEBI	acetoin
43734	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
43734	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
43734	catalase	+	1.11.1.6
43734	cytochrome oxidase	-	1.9.3.1
43734	lipase (C 14)	+
43734	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
24235	soil	Cape King (73° 05' S 166° 40'E)	Antarctica	ATA	Australia and Oceania	-73.0833	166.667 -73.0833/166.667
43734	Soil samples	Cape King	Antarctica	ATA	Australia and Oceania	-73.083	166.666 -73.083/166.666
67770	Soil from Cape King		Antarctica	ATA	Antarctica
116553	Environment, Soil, lake	Cape king lake	Antarctica	ATA	Antarctica

Taxonmaps

69479

Global distribution of 16S sequence HG795012 (>99% sequence identity) for Nesterenkonia from Microbeatlas

Aquatic Samples	600
Soil Samples	791
Animal Samples	2130
Plant Samples	449
Total Samples	3970

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24235	1	Risk group (German classification)
116553	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM436458v1 assembly for Nesterenkonia aurantiaca DSM 27373	scaffold	GCA_004364585	1436010.5	2802428805	1436010	66.44

Genome browser: GCA_004364585

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24235	Nesterenkonia sp. DSM 27373 partial 16S rRNA gene, strain DSM 27373, isolate CK5	HG795012	1481		1436010

GC content

@ref	GC-content (mol%)
43734	64.8
24235	64.8
67770	64.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nesterenkonia aurantiaca DSM 27373
NCBI: GCA_004364585

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.20	no
125439	motility	BacteriaNetⓘ	yes	78.10	no
125439	gram_stain	BacteriaNetⓘ	negative	87.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nesterenkonia aurantiaca strain DSM 27373
PATRIC: 1436010.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.93	yes
125438	anaerobic	anaerobicⓘ	no	98.67	yes
125438	spore-forming	spore-formingⓘ	no	73.36	yes
125438	aerobic	aerobicⓘ	yes	89.50	no
125438	thermophilic	thermophileⓘ	no	91.00	yes
125438	flagellated	motile2+ⓘ	no	94.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative Genomic Analyses of the Genus Nesterenkonia Unravels the Genomic Adaptation to Polar Extreme Environments.	Dai D, Lu H, Xing P, Wu Q.	Microorganisms	10.3390/microorganisms10020233	2022
Phylogeny	Nesterenkonia aurantiaca sp. nov., an alkaliphilic actinobacterium isolated from Antarctica.	Finore I, Orlando P, Di Donato P, Leone L, Nicolaus B, Poli A	Int J Syst Evol Microbiol	10.1099/ijsem.0.000917	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24235	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27373
#43734	Ilaria Finore, Pierangelo Orlando, Paola Di Donato, Luigi Leone, Barbara Nicolaus, Annarita Poli: Nesterenkonia aurantiaca sp. nov., an alkaliphilic actinobacterium isolated from Antarctica. IJSEM 66: 1554 - 1560 2016 ( DOI 10.1099/ijsem.0.000917 , PubMed 26813578 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116553	Collection of Institut Pasteur ; Curators of the CIP; CIP 110620
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nesterenkonia aurantiaca (DSM 27373, JCM 19723, CK5)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004364585

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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