Name: Tenggerimyces flavus S6R2A4-9
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132445

Type strain:

Species: Tenggerimyces flavus

Strain Designation: S6R2A4-9

Culture col. no.: DSM 28944, CGMCC 4.7241, JCM 30907

Strain history: M.-L. Fardeau; IRD-MIO, Aix-Marseille Univ., France; MerV.

NCBI tax ID(s): 1708749 (species)

SI-ID 404810

DSM 28944

Section

Tenggerimyces flavus S6R2A4-9 is a Gram-positive bacterium that was isolated from soil from the surface of limestone of a carst cave.

Gram-positive
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Actinopolymorphaceae*
	Genus	*Tenggerimyces*
	Species	**Tenggerimyces flavus**
	Full Scientific Name (LPSN)	Tenggerimyces flavus Li et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43761]	Gram stain	positive

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43761]

Culture medium

Bennett's agar

[Ref.: #43761]

Culture medium growth

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Culture medium

ISP 2

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Culture medium growth

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Culture medium

ISP 3

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Culture medium growth

[Ref.: #43761]

Culture medium

ISP 6

[Ref.: #43761]

Culture medium growth

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Culture medium

PYG agar

[Ref.: #43761]

Culture medium growth

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Culture medium

Tomato paste-oatmeal agar

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Culture medium growth

[Ref.: #24234]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #24234]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #24234]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24234]	growth	28 °C
[Ref.: #43761]	growth	10-35 °C
[Ref.: #43761]	optimum	25-28 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #24234]	Temperature range	mesophilic
[Ref.: #43761]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43761]			optimum	6.5-8
[Ref.: #43761]			growth	5.5-9

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43761]		NaCl		growth	0-2	%(w/v)
[Ref.: #43761]		NaCl		optimum	0	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43761]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #43761]	alpha-lactose ChEBI	+	carbon source
[Ref.: #43761]	cellobiose ChEBI	+	carbon source
[Ref.: #43761]	cellulose ChEBI	+	hydrolysis
[Ref.: #43761]	D-arabinose ChEBI	+	builds acid from
[Ref.: #43761]	D-arabitol ChEBI	+	carbon source
[Ref.: #43761]	D-fructose ChEBI	-	carbon source
[Ref.: #43761]	D-fucose ChEBI	+	builds acid from
[Ref.: #43761]	D-fucose ChEBI	+	carbon source
[Ref.: #43761]	D-galactose ChEBI	+	carbon source
[Ref.: #43761]	D-glucose ChEBI	+	builds acid from
[Ref.: #43761]	D-mannitol ChEBI	+	carbon source
[Ref.: #43761]	D-mannose ChEBI	+	carbon source
[Ref.: #43761]	D-ribose ChEBI	-	builds acid from
[Ref.: #43761]	D-sorbitol ChEBI	-	carbon source
[Ref.: #43761]	D-xylose ChEBI	+	builds acid from
[Ref.: #43761]	dextrin ChEBI	+	carbon source
[Ref.: #43761]	esculin ferric citrate	+	builds acid from
[Ref.: #43761]	gelatin ChEBI	+	carbon source
[Ref.: #43761]	gelatin ChEBI	+	hydrolysis
[Ref.: #43761]	gentiobiose ChEBI	+	carbon source
[Ref.: #43761]	inosine ChEBI	+	carbon source
[Ref.: #43761]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43761]	L-fucose ChEBI	+	builds acid from
[Ref.: #43761]	L-fucose ChEBI	+	carbon source
[Ref.: #43761]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43761]	L-rhamnose ChEBI	+	carbon source
[Ref.: #43761]	maltose ChEBI	+	carbon source
[Ref.: #43761]	melibiose ChEBI	+	builds acid from
[Ref.: #43761]	melibiose ChEBI	+	carbon source
[Ref.: #43761]	myo-inositol ChEBI	-	carbon source
[Ref.: #43761]	nitrate ChEBI	+/-	reduction
[Ref.: #43761]	pectin ChEBI	-	carbon source
[Ref.: #43761]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #43761]	raffinose ChEBI	-	carbon source
[Ref.: #43761]	salicin ChEBI	+	carbon source
[Ref.: #43761]	starch ChEBI	-	hydrolysis
[Ref.: #43761]	sucrose ChEBI	-	builds acid from
[Ref.: #43761]	sucrose ChEBI	+	carbon source
[Ref.: #43761]	trehalose ChEBI	+	builds acid from
[Ref.: #43761]	trehalose ChEBI	+	carbon source
[Ref.: #43761]	turanose ChEBI	+	carbon source
[Ref.: #43761]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43761]	tween 40 ChEBI	+	carbon source
[Ref.: #43761]	tween 40 ChEBI	+	hydrolysis
[Ref.: #43761]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43761]	xylitol ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43761]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43761]	acid phosphatase	+	3.1.3.2
[Ref.: #43761]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43761]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43761]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43761]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43761]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43761]	beta-galactosidase	+	3.2.1.23
[Ref.: #43761]	beta-glucosidase	+	3.2.1.21
[Ref.: #43761]	catalase	+	1.11.1.6
[Ref.: #43761]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43761]	esterase (C 4)	+
[Ref.: #43761]	esterase Lipase (C 8)	+
[Ref.: #43761]	leucine arylamidase	+	3.4.11.1
[Ref.: #43761]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43761]	trypsin	+	3.4.21.4
[Ref.: #43761]	urease	-	3.5.1.5
[Ref.: #43761]	valine arylamidase	+/-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24234]	Sample type/isolated from	soil from the surface of limestone of a carst cave
[Ref.: #24234]	Geographic location (country and/or sea, region)	Henan Province, Shenxian Cave
[Ref.: #24234]	Country	China
[Ref.: #24234]	Country ISO 3 Code	CHN
[Ref.: #24234]	Continent	Asia

[Ref.: #43761]	Sample type/isolated from	Soil sample collected from the surface of limestone of Shenxian Cave
[Ref.: #43761]	Geographic location (country and/or sea, region)	Henen Province
[Ref.: #43761]	Country	China
[Ref.: #43761]	Country ISO 3 Code	CHN
[Ref.: #43761]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sediment of a saline lake located in Ain Salah
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Geologic
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP405230 (>99% sequence identity) for Tenggerimyces flavus from Microbeatlas

Aquatic Samples	98
Soil Samples	3231
Animal Samples	112
Plant Samples	195
Total Samples	3636

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24234]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Virgibacillus ainsalahensis 16S ribosomal RNA gene, partial sequence	KF146340	1519	ENA	1337860 tax ID
[Ref.: #24234]	Tenggerimyces flavus strain S6R2A4-9 16S ribosomal RNA gene, partial sequence	KP405230	1476	ENA	1708749 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Tenggerimyces flavus DSM 28944	GCA_016907715	contig	GenBank	1708749 tax ID	*
[Ref.: #66792]	Tenggerimyces flavus strain DSM 28944	1708749.3	wgs	PATRIC	1708749 tax ID	*
[Ref.: #66792]	Tenggerimyces flavus DSM 28944	2893660585	draft	JGI IMG/M	1708749 tax ID	*

[Ref.: #43761]	GC-content	67 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #24234]	GC-content	67.0 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	45.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Tenggerimyces flavus strain DSM 28944 PATRIC: 1708749.3
[Ref.: #69480]	motile	no	92.729	no
[Ref.: #69480]	gram-positive	yes	86.584	yes
[Ref.: #69480]	anaerobic	no	98.711	no
[Ref.: #69480]	aerobic	yes	93.336	no
[Ref.: #69480]	halophile	no	92.135	yes
[Ref.: #69480]	spore-forming	yes	65.711	no
[Ref.: #69480]	thermophile	no	94.016	yes
[Ref.: #69480]	glucose-util	yes	87.63	yes
[Ref.: #69480]	flagellated	no	97.966	no
[Ref.: #69480]	glucose-ferment	no	89.811	no

Availability in culture collections External links

[Ref.: #24234]

Culture collection no.

DSM 28944, CGMCC 4.7241, JCM 30907

[Ref.: #90783]

SI-ID 404810

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tenggerimyces flavus sp. nov., isolated from soil in a karst cave, and emended description of the genus Tenggerimyces.	Li XJ, Dai SJ, Liu SW, Liu JM, Chen L, Hu L, Sun CH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000908	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24234

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28944

#43761

Xiao-Jun Li, Su-Juan Dai, Shao-Wei Liu, Jia-Meng Liu, Li Chen, Lin Hu, Cheng-Hang Sun: Tenggerimyces flavus sp. nov., isolated from soil in a karst cave, and emended description of the genus Tenggerimyces. IJSEM 66: 1499 - 1505 2016 ( DOI 10.1099/ijsem.0.000908 , PubMed 26790906 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90783

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404810.1 )

* These data were automatically processed and therefore are not curated

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Tenggerimyces flavus strain DSM 28944

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