Strain identifier

BacDive ID: 132445

Type strain: Yes

Species: Tenggerimyces flavus

Strain Designation: S6R2A4-9

Strain history: M.-L. Fardeau; IRD-MIO, Aix-Marseille Univ., France; MerV.

NCBI tax ID(s): 1708749 (species)

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General

@ref: 24234

BacDive-ID: 132445

DSM-Number: 28944

keywords: genome sequence, 16S sequence, Bacteria, Gram-positive

description: Tenggerimyces flavus S6R2A4-9 is a Gram-positive bacterium that was isolated from soil from the surface of limestone of a carst cave.

NCBI tax id

  • NCBI tax id: 1708749
  • Matching level: species

strain history

@refhistory
24234<- C.-H. Sun, Chinese Acad. Med. Sciences & Peking Union Medical College; S6R2A4-9 <- S.-J. Dai
67770M.-L. Fardeau; IRD-MIO, Aix-Marseille Univ., France; MerV.

doi: 10.13145/bacdive132445.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Actinopolymorphaceae
  • genus: Tenggerimyces
  • species: Tenggerimyces flavus
  • full scientific name: Tenggerimyces flavus Li et al. 2016

@ref: 24234

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinopolymorphaceae

genus: Tenggerimyces

species: Tenggerimyces flavus

full scientific name: Tenggerimyces flavus Li et al. 2016

strain designation: S6R2A4-9

type strain: yes

Morphology

cell morphology

  • @ref: 43761
  • gram stain: positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43761Bennett's agaryes
43761ISP 2yes
43761ISP 3yes
43761ISP 6yes
43761PYG agaryes
43761Tomato paste-oatmeal agaryes
24234GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
43761positivegrowth10-35
43761positiveoptimum25-28mesophilic
24234positivegrowth28mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
43761positivegrowth5.5-9alkaliphile
43761positiveoptimum6.5-8

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
43761NaClpositivegrowth0-2 %(w/v)
43761NaClpositiveoptimum0 %(w/v)

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4376116988D-ribose-builds acid from
4376130849L-arabinose-builds acid from
4376162345L-rhamnose-builds acid from
4376117992sucrose-builds acid from
4376115824D-fructose-carbon source
4376117924D-sorbitol-carbon source
4376117268myo-inositol-carbon source
4376117309pectin-carbon source
4376116634raffinose-carbon source
4376128017starch-hydrolysis
4376117108D-arabinose+builds acid from
4376128847D-fucose+builds acid from
4376117634D-glucose+builds acid from
4376165327D-xylose+builds acid from
43761esculin ferric citrate+builds acid from
4376118287L-fucose+builds acid from
4376128053melibiose+builds acid from
43761potassium 5-dehydro-D-gluconate+builds acid from
4376127082trehalose+builds acid from
4376117151xylitol+builds acid from
4376117925alpha-D-glucose+carbon source
4376136219alpha-lactose+carbon source
4376117057cellobiose+carbon source
4376118333D-arabitol+carbon source
4376128847D-fucose+carbon source
4376112936D-galactose+carbon source
4376116899D-mannitol+carbon source
4376116024D-mannose+carbon source
4376123652dextrin+carbon source
437615291gelatin+carbon source
4376128066gentiobiose+carbon source
4376117596inosine+carbon source
4376118287L-fucose+carbon source
4376162345L-rhamnose+carbon source
4376117306maltose+carbon source
4376128053melibiose+carbon source
4376117814salicin+carbon source
4376117992sucrose+carbon source
4376127082trehalose+carbon source
4376132528turanose+carbon source
4376153423tween 40+carbon source
4376162968cellulose+hydrolysis
437615291gelatin+hydrolysis
4376153424tween 20+hydrolysis
4376153423tween 40+hydrolysis
4376153426tween 80+hydrolysis
4376117632nitrate+/-reduction

metabolite production

  • @ref: 43761
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
43761cytochrome oxidase-1.9.3.1
43761catalase+1.11.1.6
43761acid phosphatase+3.1.3.2
43761alkaline phosphatase+3.1.3.1
43761alpha-chymotrypsin+3.4.21.1
43761esterase (C 4)+
43761esterase Lipase (C 8)+
43761alpha-galactosidase+3.2.1.22
43761beta-galactosidase+3.2.1.23
43761N-acetyl-beta-glucosaminidase+3.2.1.52
43761alpha-glucosidase+3.2.1.20
43761beta-glucosidase+3.2.1.21
43761leucine arylamidase+3.4.11.1
43761alpha-mannosidase+3.2.1.24
43761trypsin+3.4.21.4
43761valine arylamidase+/-
43761urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
24234soil from the surface of limestone of a carst caveHenan Province, Shenxian CaveChinaCHNAsia
43761Soil sample collected from the surface of limestone of Shenxian CaveHenen ProvinceChinaCHNAsia
67770Sediment of a saline lake located in Ain Salah

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Geologic
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_81787.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_779;96_34286;97_43481;98_56848;99_81787&stattab=map
  • Last taxonomy: Tenggerimyces flavus
  • 16S sequence: KP405230
  • Sequence Identity:
  • Total samples: 3636
  • soil counts: 3231
  • aquatic counts: 98
  • animal counts: 112
  • plant counts: 195

Safety information

risk assessment

  • @ref: 24234
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
24234Tenggerimyces flavus strain S6R2A4-9 16S ribosomal RNA gene, partial sequenceKP4052301476ena1708749
67770Virgibacillus ainsalahensis 16S ribosomal RNA gene, partial sequenceKF1463401519ena1337860

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Tenggerimyces flavus DSM 28944GCA_016907715contigncbi1708749
66792Tenggerimyces flavus strain DSM 289441708749.3wgspatric1708749
66792Tenggerimyces flavus DSM 289442893660585draftimg1708749

GC content

@refGC-contentmethod
4376167thermal denaturation, midpoint method (Tm)
2423467.0thermal denaturation, midpoint method (Tm)
6777045.3high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno92.729no
gram-positiveyes86.584yes
anaerobicno98.711no
aerobicyes93.336no
halophileno92.135yes
spore-formingyes65.711no
thermophileno94.016yes
glucose-utilyes87.63yes
flagellatedno97.966no
glucose-fermentno89.811no

External links

@ref: 24234

culture collection no.: DSM 28944, CGMCC 4.7241, JCM 30907

straininfo link

  • @ref: 90783
  • straininfo: 404810

literature

  • topic: Phylogeny
  • Pubmed-ID: 26790906
  • title: Tenggerimyces flavus sp. nov., isolated from soil in a karst cave, and emended description of the genus Tenggerimyces.
  • authors: Li XJ, Dai SJ, Liu SW, Liu JM, Chen L, Hu L, Sun CH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000908
  • year: 2016

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24234Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28944Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28944)
43761Xiao-Jun Li, Su-Juan Dai, Shao-Wei Liu, Jia-Meng Liu, Li Chen, Lin Hu, Cheng-Hang SunTenggerimyces flavus sp. nov., isolated from soil in a karst cave, and emended description of the genus Tenggerimyces10.1099/ijsem.0.000908IJSEM 66: 1499-1505 201626790906
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90783Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404810.1