Name: Methylibium sp. Root1272
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132319

Type strain:

Species: Methylibium sp.

Strain Designation: Root1272

Culture col. no.: DSM 102455

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root1272 <- Y. Bai

NCBI tax ID(s): 2067992 (species)

SI-ID 406674

DSM 102455

Special Collections

Section

Methylibium sp. Root1272 is a Gram-negative bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	[Burkholderiales, not assigned to family]
	Genus	*Methylibium*
	Full Scientific Name (LPSN)	Methylibium Nakatsu et al. 2006

Synonym

Pseudorivibacter

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %94.894

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24108]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #24108]

Culture medium growth

[Ref.: #24108]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24108]

Culture medium composition

expand / minimize

[Ref.: #24108]

Culture medium

TRYPTONE YEAST EXTRACT GLUCOSE MEDIUM (TYG) (DSMZ Medium 1618)

[Ref.: #24108]

Culture medium growth

[Ref.: #24108]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24108]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24108]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %93.835

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24108]	Sample type/isolated from	roots of Arabidopsis thaliana ecotype Shakdara (Sha)
[Ref.: #24108]	Host species	Arabidopsis thaliana
[Ref.: #24108]	Geographic location (country and/or sea, region)	Cologne (50.958N 6.856E)
[Ref.: #24108]	Country	Germany
[Ref.: #24108]	Country ISO 3 Code	DEU
[Ref.: #24108]	Continent	Europe
[Ref.: #24108]	Geographic location	50.9580°/6.8560°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methylibium sp. Root1272	GCA_001425905	contig	GenBank ENA	1736441 tax ID	*
[Ref.: #66792]	Methylibium sp. Root1272	1736441.3	wgs	PATRIC	1736441 tax ID	*
[Ref.: #66792]	Methylibium sp. Root1272	2643221660	draft	JGI IMG/M	1736441 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methylibium sp. Root1272 PATRIC: 1736441.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	94.894	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.887	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.835	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	79.863	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.857	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	81.115	no

Availability in culture collections External links

[Ref.: #24108]

Culture collection no.

DSM 102455

[Ref.: #90666]

SI-ID 406674

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24108

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102455

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90666

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406674.1 )

* These data were automatically processed and therefore are not curated

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