Name: Leucobacter zeae CC-MF41
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132288

Type strain:

Species: Leucobacter zeae

Strain Designation: CC-MF41

Culture col. no.: DSM 103238, BCRC 80515, LMG 27265, JCM 18686

Strain history: C.-C. Young; Natl. Chung Hsing Univ., Taiwan; CC-MF41.

NCBI tax ID(s): 1257004 (species)

SI-ID 382176

LMG 27265, BCRC 80515, DSM 103238

Section

Leucobacter zeae CC-MF41 is a mesophilic bacterium that was isolated from rhizosphere, Zea mays.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Leucobacter*
	Species	**Leucobacter zeae**
	Full Scientific Name (LPSN)	Leucobacter zeae Lai et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.062

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24077]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #24077]

Culture medium growth

[Ref.: #24077]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24077]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24077]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #24077]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.99

[Ref.: #67770]

Observation

quinones: MK-11

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24077]	Sample type/isolated from	rhizosphere, Zea mays
[Ref.: #24077]	Host species	Zea mays
[Ref.: #24077]	Geographic location (country and/or sea, region)	Wufeng District, Taichung City
[Ref.: #24077]	Country	Taiwan
[Ref.: #24077]	Country ISO 3 Code	TWN
[Ref.: #24077]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Rhizosphere soil of maize (Zea mays)
[Ref.: #67770]	Host species	Zea mays
[Ref.: #67770]	Geographic location (country and/or sea, region)	Wufeng District, Taichung
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24077]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24077]	Leucobacter zeae strain CC-MF41 16S ribosomal RNA gene, partial sequence	JX669524	1498	ENA	1257004 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Leucobacter zeae CC-MF41	GCA_016758175	scaffold	GenBank	1257004 tax ID	*
[Ref.: #66792]	Leucobacter zeae strain CC-MF41	1257004.3	wgs	PATRIC	1257004 tax ID	*

[Ref.: #67770]

GC-content

72.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Leucobacter zeae CC-MF41 NCBI: GCA_016758175.1
[Ref.: #69481]	spore-forming	no	83	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Leucobacter zeae CC-MF41 NCBI: GCA_016758175.1
[Ref.: #69480]	flagellated	no	97.697	no
[Ref.: #69480]	gram-positive	yes	90.565	no
[Ref.: #69480]	anaerobic	no	99.399	no
[Ref.: #69480]	aerobic	yes	95.085	no
[Ref.: #69480]	halophile	no	85.672	no
[Ref.: #69480]	spore-forming	no	94.449	no
[Ref.: #69480]	thermophile	no	99.438	yes
[Ref.: #69480]	glucose-util	yes	77.161	no
[Ref.: #69480]	motile	no	87.703	no
[Ref.: #69480]	glucose-ferment	no	90.436	no

Availability in culture collections External links

[Ref.: #24077]

Culture collection no.

DSM 103238, BCRC 80515, LMG 27265, JCM 18686

[Ref.: #90635]

SI-ID 382176

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Leucobacter chromiisoli sp. nov., isolated from chromium-containing chemical plant soil.	Xu Z, Li X, Tian J, Gan L, Tian Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004923	2021	*
Phylogeny	Leucobacter muris sp. nov., isolated from the nose of a laboratory mouse.	Benga L, Sproer C, Schumann P, Verbarg S, Bunk B, Engelhardt E, Benten WPM, Sager M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003446	2019	*
Phylogeny	Leucobacter zeae sp. nov., isolated from the rhizosphere of maize (Zea mays L.).	Lai WA, Lin SY, Hameed A, Hsu YH, Liu YC, Huang HR, Shen FT, Young CC	Int J Syst Evol Microbiol	10.1099/ijsem.0.000640	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24077

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103238

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90635

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID382176.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Leucobacter zeae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF