Strain identifier
BacDive ID: 132288
Type strain: 
Species: Leucobacter zeae
Strain Designation: CC-MF41
Strain history: C.-C. Young; Natl. Chung Hsing Univ., Taiwan; CC-MF41.
NCBI tax ID(s): 1257004 (species)
version 9.1 (current version)
General
@ref: 24077
BacDive-ID: 132288
DSM-Number: 103238
keywords: genome sequence, 16S sequence, Bacteria, Gram-positive
description: Leucobacter zeae CC-MF41 is a Gram-positive bacterium that was isolated from rhizosphere, Zea mays.
NCBI tax id
- NCBI tax id: 1257004
- Matching level: species
strain history
| @ref | history |
|---|---|
| 24077 | <- BCCM/LMG, University of Gent, Belgium; LMG 27265 <- Chiu-Chung Young, National Chung Hsing University, Taiwan <- Hsuan-Ru Huang; CC-MF41 |
| 67770 | C.-C. Young; Natl. Chung Hsing Univ., Taiwan; CC-MF41. |
doi: 10.13145/bacdive132288.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Leucobacter
- species: Leucobacter zeae
- full scientific name: Leucobacter zeae Lai et al. 2015
@ref: 24077
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Leucobacter
species: Leucobacter zeae
full scientific name: Leucobacter zeae Lai et al. 2015
strain designation: CC-MF41
type strain: yes
Morphology
cell morphology
- @ref: 69480
- motility: no
- confidence: 94.5
Culture and growth conditions
culture medium
- @ref: 24077
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 24077 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: aerobe
- confidence: 90.258
observation
- @ref: 67770
- observation: quinones: MK-11
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 24077 | rhizosphere, Zea mays | Zea mays | Wufeng District, Taichung City | Taiwan, Province of China | TWN | Asia |
| 67770 | Rhizosphere soil of maize (Zea mays) | Zea mays | Wufeng District, Taichung | Taiwan, Province of China | TWN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Rhizosphere |
Safety information
risk assessment
- @ref: 24077
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24077
- description: Leucobacter zeae strain CC-MF41 16S ribosomal RNA gene, partial sequence
- accession: JX669524
- length: 1498
- database: nuccore
- NCBI tax ID: 1257004
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Leucobacter zeae CC-MF41 | GCA_016758175 | scaffold | ncbi | 1257004 |
| 66792 | Leucobacter zeae strain CC-MF41 | 1257004.3 | wgs | patric | 1257004 |
GC content
- @ref: 67770
- GC-content: 72.1
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 83 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 89.474 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.896 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 90.258 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 83.053 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96.984 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 94.5 | no |
External links
@ref: 24077
culture collection no.: DSM 103238, BCRC 80515, LMG 27265, JCM 18686
straininfo link
- @ref: 90635
- straininfo: 382176
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26420495 | Leucobacter zeae sp. nov., isolated from the rhizosphere of maize (Zea mays L.). | Lai WA, Lin SY, Hameed A, Hsu YH, Liu YC, Huang HR, Shen FT, Young CC | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000640 | 2015 | Actinomycetales/*classification/genetics/isolation & purification, Aminobutyrates/chemistry, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Taiwan, Vitamin K 2/chemistry, Zea mays/*microbiology | Genetics |
| Phylogeny | 31099739 | Leucobacter muris sp. nov., isolated from the nose of a laboratory mouse. | Benga L, Sproer C, Schumann P, Verbarg S, Bunk B, Engelhardt E, Benten WPM, Sager M | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003446 | 2019 | Actinobacteria/*classification/isolation & purification, Animals, Animals, Laboratory/microbiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Germany, Glycolipids/chemistry, Mice/*microbiology, Nose/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistry | Transcriptome |
| Phylogeny | 34319867 | Leucobacter chromiisoli sp. nov., isolated from chromium-containing chemical plant soil. | Xu Z, Li X, Tian J, Gan L, Tian Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004923 | 2021 | Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, *Chromium, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, *Soil Pollutants, Vitamin K 2/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24077 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103238 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103238) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 90635 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID382176.1 |