Leucobacter musarum subsp. musarum (DSM 27160, CIP 110721, CBX 152)

Name: Leucobacter musarum subsp. musarum (DSM 27160, CIP 110721, CBX 152)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132272

Type strain

Strain Designation CBX 152, Verde2, CBX152

Culture col. no. DSM 27160 CIP 110721 CBX 152 Verde2 JCM 31937 1 more

NCBI tax ID(s) 1930747 1461261

Special Collections DSMZ JCM CIP

History <- L. Clark, University of Oxford, United Kingdom; CBX 152 <- J. Hodgkin CIP 110721 <-- L. C. Clark; Univ. of Oxford, UK; CBX152. CIP <- 2014, L. Clark, Oxford Univ., Oxford, UK: strain CBX152

Links

Leucobacter musarum subsp. musarum CBX 152 is a Gram-negative, rod-shaped animal pathogen that was isolated from diseased nematode strain of genus Caenorhabditis.

Gram-negative rod-shaped animal pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403730

DSM 27160,CIP 110721

@ref 20215

Last LPSN update 2026-02-09 11:31:40

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Leucobacter

Species Leucobacter musarum subsp. musarum

Full scientific name Leucobacter musarum subsp. musarum Clark and Hodgkin 2015

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
125438				91.488
121203	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24061	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
121203	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
24061	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96

Observation

67770

Observationquinones: MK-10, MK-11

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Nematoda

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Isolation date
24061	diseased nematode strain of genus Caenorhabditis	Caenorhabditis	Santa Antao, Pico da Cruz (17° 6' 0'' N 25° 01' 45'' E)	Cape Verde	CPV	Africa	17.1	-25.0292 17.1/-25.0292
67770	Nematodes from Santa Antao			Cape Verde	CPV	Africa
121203	Environment, Soil			Cape Verde	CPV	Africa			2009

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
24061		1	Risk group (German classification)
121203		1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	CBX152_1.1 assembly for Leucobacter musarum subsp. musarum CBX152	contig	GCA_001273845	1461261.3	2848235477	1461261	46.94

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24061	Leucobacter musarum subsp. musarum strain CBX152 16S ribosomal RNA gene, partial sequence	KF906845	1159		1461261

GC content

@ref	GC-content (mol%)	Method
24061	66.77	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Leucobacter musarum subsp. musarum CBX152
NCBI: GCA_001273845

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	83.50	no
125439	motility	BacteriaNetⓘ	yes	55.50	no
125439	gram_stain	BacteriaNetⓘ	positive	73.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Leucobacter sp. CBX152
PATRIC: 1461261.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.32	no
125438	anaerobic	anaerobicⓘ	no	96.51	no
125438	spore-forming	spore-formingⓘ	no	81.54	no
125438	aerobic	aerobicⓘ	yes	81.03	no
125438	thermophilic	thermophileⓘ	no	96.50	yes
125438	flagellated	motile2+ⓘ	no	91.49	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Leucobacter musarum subsp. musarum sp. nov., subsp. nov., Leucobacter musarum subsp. japonicus subsp. nov., and Leucobacter celer subsp. astrifaciens subsp. nov., three nematopathogenic bacteria isolated from Caenorhabditis, with an emended description of Leucobacter celer.	Clark LC, Hodgkin J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000523	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24061	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27160
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#121203	Collection of Institut Pasteur ; Curators of the CIP; CIP 110721
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Leucobacter musarum subsp. musarum (DSM 27160, CIP 110721, CBX 152)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001273845

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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