Actinoallomurus bryophytorum (DSM 102200, CGMCC 4.7200, JCM 30340)

Name: Actinoallomurus bryophytorum (DSM 102200, CGMCC 4.7200, JCM 30340)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132268

Type strain

Strain Designation NEAU-TX1-15

Culture col. no. DSM 102200 CGMCC 4.7200 JCM 30340 NEAU-TX1-15

NCBI tax ID(s) 1490222

Special Collections DSMZ JCM

History DSMZ <- JCM; JCM 30340 <- C. Liu; Northeast Agric. Univ., China; NEAU-TX1-15 JCM <-- C. Liu; Northeast Agric. Univ., China; NEAU-TX1-15.

Links

Actinoallomurus bryophytorum NEAU-TX1-15 is a bacterium that was isolated from moss.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404389

JCM 30340,DSM 102200

@ref 20215

Last LPSN update 2026-05-29 08:37:49

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinoallomurus

Species Actinoallomurus bryophytorum

Full scientific name Actinoallomurus bryophytorum Li et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	98.264
125439		93.328

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24057	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
24057	GPHF-MEDIUM (DSMZ Medium 553)		Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24057	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.281

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₈)

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	urea cycle	100	13 of 13
66794	propanol degradation	100	7 of 7
66794	ethanol fermentation	100	2 of 2
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	cardiolipin biosynthesis	100	7 of 7
66794	adipate degradation	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	gallate degradation	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ethylmalonyl-CoA pathway	100	5 of 5
66794	myo-inositol biosynthesis	100	10 of 10
66794	glycogen metabolism	100	5 of 5
66794	aspartate and asparagine metabolism	100	9 of 9
66794	enterobactin biosynthesis	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	butanoate fermentation	100	4 of 4
66794	resorcinol degradation	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	ketogluconate metabolism	100	8 of 8
66794	IAA biosynthesis	100	3 of 3
66794	lipoate biosynthesis	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	methylglyoxal degradation	100	5 of 5
66794	starch degradation	100	10 of 10
66794	acetate fermentation	100	4 of 4
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	gluconeogenesis	100	8 of 8
66794	coenzyme A metabolism	100	4 of 4
66794	sulfopterin metabolism	100	4 of 4
66794	cellulose degradation	100	5 of 5
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	suberin monomers biosynthesis	100	2 of 2
66794	ceramide biosynthesis	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	formaldehyde oxidation	100	3 of 3
66794	cyanate degradation	100	3 of 3
66794	NAD metabolism	94.44	17 of 18
66794	glutamate and glutamine metabolism	92.86	26 of 28
66794	leucine metabolism	92.31	12 of 13
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	Entner Doudoroff pathway	90	9 of 10
66794	propionate fermentation	90	9 of 10
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	heme metabolism	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	citric acid cycle	85.71	12 of 14
66794	glutathione metabolism	85.71	12 of 14
66794	purine metabolism	84.04	79 of 94
66794	vitamin B12 metabolism	82.35	28 of 34
66794	glycolysis	82.35	14 of 17
66794	proline metabolism	81.82	9 of 11
66794	tryptophan metabolism	81.58	31 of 38
66794	degradation of sugar alcohols	81.25	13 of 16
66794	methionine metabolism	80.77	21 of 26
66794	3-chlorocatechol degradation	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	creatinine degradation	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	4-hydroxyphenylacetate degradation	80	8 of 10
66794	3-phenylpropionate degradation	80	12 of 15
66794	hydrogen production	80	4 of 5
66794	phenol degradation	80	16 of 20
66794	alanine metabolism	79.31	23 of 29
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	allantoin degradation	77.78	7 of 9
66794	cysteine metabolism	77.78	14 of 18
66794	pyrimidine metabolism	77.78	35 of 45
66794	d-mannose degradation	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	androgen and estrogen metabolism	75	12 of 16
66794	toluene degradation	75	3 of 4
66794	cyclohexanol degradation	75	3 of 4
66794	arginine metabolism	75	18 of 24
66794	degradation of aromatic, nitrogen containing compounds	75	9 of 12
66794	metabolism of disaccharids	72.73	8 of 11
66794	cholesterol biosynthesis	72.73	8 of 11
66794	d-xylose degradation	72.73	8 of 11
66794	histidine metabolism	72.41	21 of 29
66794	degradation of hexoses	72.22	13 of 18
66794	degradation of sugar acids	72	18 of 25
66794	aclacinomycin biosynthesis	71.43	5 of 7
66794	tyrosine metabolism	71.43	10 of 14
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	lysine metabolism	71.43	30 of 42
66794	oxidative phosphorylation	70.33	64 of 91
66794	phosphatidylethanolamine bioynthesis	69.23	9 of 13
66794	non-pathway related	68.42	26 of 38
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	bile acid biosynthesis, neutral pathway	64.71	11 of 17
66794	degradation of pentoses	64.29	18 of 28
66794	lipid metabolism	61.29	19 of 31
66794	arachidonate biosynthesis	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	carotenoid biosynthesis	59.09	13 of 22
66794	daunorubicin biosynthesis	55.56	5 of 9
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	coenzyme M biosynthesis	50	5 of 10
66794	quinate degradation	50	1 of 2
66794	carnitine metabolism	50	4 of 8
66794	ribulose monophosphate pathway	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	ascorbate metabolism	50	11 of 22
66794	phenylmercury acetate degradation	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	vitamin E metabolism	50	2 of 4
66794	lactate fermentation	50	2 of 4
66794	catecholamine biosynthesis	50	2 of 4
66794	CMP-KDO biosynthesis	50	2 of 4
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	pantothenate biosynthesis	50	3 of 6
66794	glycine metabolism	50	5 of 10
66794	polyamine pathway	47.83	11 of 23
66794	sulfate reduction	46.15	6 of 13
66794	lipid A biosynthesis	44.44	4 of 9
66794	nitrate assimilation	44.44	4 of 9
66794	elloramycin biosynthesis	40	2 of 5
66794	O-antigen biosynthesis	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	vitamin B6 metabolism	36.36	4 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	1,4-dihydroxy-6-naphthoate biosynthesis	33.33	2 of 6
66794	chlorophyll metabolism	33.33	6 of 18
66794	sulfoquinovose degradation	33.33	1 of 3
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	methanogenesis from CO2	25	3 of 12
66794	alginate biosynthesis	25	1 of 4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Moss

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
24057	moss	Wuchang, Heilongjiang province	China	CHN	Asia	44.25	127.9 44.25/127.9
67770	Moss	Wuchang, Heilongjiang Province, north China	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24057	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM671642v1 assembly for Actinoallomurus bryophytorum DSM 102200	contig	GCA_006716425	1490222.3	2816332138	1490222	70.74

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24057	Actinoallomurus bryophytorum strain NEAU-TX1-15 16S ribosomal RNA gene, partial sequence	KJ425409	1508		1490222

GC content

@ref	GC-content (mol%)	Method
24057	70.8	thermal denaturation, midpoint method (Tm)
67770	70.5-71.1	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM671642v1 assembly for Actinoallomurus bryophytorum DSM 102200
NCBI: GCA_006716425

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.28	no
125439	motility	BacteriaNetⓘ	no	93.33	no
125439	gram_stain	BacteriaNetⓘ	positive	98.26	no
125439	spore_formation	BacteriaNetⓘ	yes	60.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinoallomurus bryophytorum strain DSM 102200
PATRIC: 1490222.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.42	no
125438	anaerobic	anaerobicⓘ	no	91.68	no
125438	spore-forming	spore-formingⓘ	yes	86.24	no
125438	aerobic	aerobicⓘ	yes	87.63	no
125438	thermophilic	thermophileⓘ	no	96.76	yes
125438	flagellated	motile2+ⓘ	no	84.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoallomurus bryophytorum sp. nov., an endophytic actinomycete isolated from moss (Bryophyta).	Li C, Wang H, Jin P, Zheng W, Chu L, Liu C, Li J, Xiang W, Wang X	Antonie Van Leeuwenhoek	10.1007/s10482-015-0498-z	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24057	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102200
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Actinoallomurus bryophytorum (DSM 102200, CGMCC 4.7200, JCM 30340)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_006716425

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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