Strain identifier
BacDive ID: 132268
Type strain: 
Species: Actinoallomurus bryophytorum
Strain Designation: NEAU-TX1-15
Strain history: C. Liu; Northeast Agric. Univ., China; NEAU-TX1-15.
NCBI tax ID(s): 1490222 (species)
version 8.1 (current version)
General
@ref: 24057
BacDive-ID: 132268
DSM-Number: 102200
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Actinoallomurus bryophytorum NEAU-TX1-15 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from moss.
NCBI tax id
- NCBI tax id: 1490222
- Matching level: species
strain history
| @ref | history |
|---|---|
| 24057 | <- JCM; JCM 30340 <- C. Liu; Northeast Agric. Univ., China; NEAU-TX1-15 |
| 67770 | C. Liu; Northeast Agric. Univ., China; NEAU-TX1-15. |
doi: 10.13145/bacdive132268.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Thermomonosporaceae
- genus: Actinoallomurus
- species: Actinoallomurus bryophytorum
- full scientific name: Actinoallomurus bryophytorum Li et al. 2015
@ref: 24057
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Thermomonosporaceae
genus: Actinoallomurus
species: Actinoallomurus bryophytorum
full scientific name: Actinoallomurus bryophytorum Li et al. 2015
strain designation: NEAU-TX1-15
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 24057
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 24057 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
observation
- @ref: 67770
- observation: quinones: MK-9(H6), MK-9(H8)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 24057 | moss | Wuchang, Heilongjiang province | China | CHN | Asia | 44.25 | 127.9 |
| 67770 | Moss | Wuchang, Heilongjiang Province, north China | China | CHN | Asia |
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Moss
Safety information
risk assessment
- @ref: 24057
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24057
- description: Actinoallomurus bryophytorum strain NEAU-TX1-15 16S ribosomal RNA gene, partial sequence
- accession: KJ425409
- length: 1508
- database: ena
- NCBI tax ID: 1490222
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Actinoallomurus bryophytorum strain DSM 102200 | 1490222.3 | wgs | patric | 1490222 |
| 66792 | Actinoallomurus bryophytorum DSM 102200 | 2816332138 | draft | img | 1490222 |
| 67770 | Actinoallomurus bryophytorum DSM 102200 | GCA_006716425 | contig | ncbi | 1490222 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 24057 | 70.8 | thermal denaturation, midpoint method (Tm) |
| 67770 | 70.5-71.1 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | no | 94.656 | no |
| gram-positive | yes | 90.973 | no |
| anaerobic | no | 98.388 | no |
| halophile | no | 92.061 | no |
| spore-forming | yes | 93.175 | no |
| glucose-util | yes | 88.472 | no |
| flagellated | no | 98.417 | no |
| thermophile | no | 97.061 | yes |
| aerobic | yes | 91.704 | no |
| glucose-ferment | no | 90.959 | no |
External links
@ref: 24057
culture collection no.: DSM 102200, CGMCC 4.7200, JCM 30340
straininfo link
- @ref: 90615
- straininfo: 404389
literature
- topic: Phylogeny
- Pubmed-ID: 26033369
- title: Actinoallomurus bryophytorum sp. nov., an endophytic actinomycete isolated from moss (Bryophyta).
- authors: Li C, Wang H, Jin P, Zheng W, Chu L, Liu C, Li J, Xiang W, Wang X
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-015-0498-z
- year: 2015
- mesh: Actinobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Bryophyta/*microbiology, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Endophytes/*classification/genetics/*isolation & purification/physiology, Fatty Acids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spores, Bacterial/cytology, Vitamin K 2/analysis
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 24057 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102200 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102200) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 90615 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404389.1 |