Name: Staphylococcus croceilyticus DSM 17225
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132149

Type strain:

Species: Staphylococcus croceilyticus

Culture col. no.: DSM 17225, CCM 8421, CCUG 62728, MCC 10046

Strain history: <- D. W. Stroman, Alcon Research Ltd, Forth Worth, USA <- J. Dajcs; MCC 10046

NCBI tax ID(s): 1276936 (species)

SI-ID 400296

DSM 17225, CCUG 62728

Section

Staphylococcus croceilyticus DSM 17225 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from ear swab of a patient suffering from acute otitis externa.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Staphylococcus*
	Species	**Staphylococcus croceilyticus**
	Full Scientific Name (LPSN)	Staphylococcus croceilyticus (Pant??ek et al. 2013) Madhaiyan et al. 2020

Synonym

Staphylococcus petrasii subsp. croceilyticus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23939]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #23939]

Culture medium growth

[Ref.: #23939]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23939]

Culture medium composition

expand / minimize

[Ref.: #23939]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #23939]

Culture medium growth

[Ref.: #23939]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23939]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23939]			growth	37 °C
[Ref.: #62892]			growth	37 °C

[Ref.: #23939]	Temperature range	mesophilic
[Ref.: #62892]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62892]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.859

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68375]	arabinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	arginine ChEBI	+	hydrolysis	* from API ID32STA
[Ref.: #68375]	cellobiose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	D-fructose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-glucose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-mannitol ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	D-mannose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	D-ribose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	esculin ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68375]	lactose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	maltose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	N-acetylglucosamine ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	nitrate ChEBI	+	reduction	* from API ID32STA
[Ref.: #68375]	ornithine ChEBI	-	degradation	* from API ID32STA
[Ref.: #68375]	raffinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	sucrose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	trehalose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	turanose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	urea ChEBI	+	hydrolysis	* from API ID32STA
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #68375]		novobiocin ChEBI	yes	1.8	µg	* from API ID32STA

	Metabolite production	Metabolite	Production
[Ref.: #68375]		acetoin ChEBI	no	* from API ID32STA

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68375]		acetoin ChEBI	-	* from API ID32STA

	Enzyme	Enzyme activity	EC number
[Ref.: #68375]	alkaline phosphatase	-	3.1.3.1	* from API ID32STA
[Ref.: #68375]	arginine dihydrolase	+	3.5.3.6	* from API ID32STA
[Ref.: #68375]	beta-galactosidase	-	3.2.1.23	* from API ID32STA
[Ref.: #68375]	beta-glucosidase	-	3.2.1.21	* from API ID32STA
[Ref.: #68375]	beta-glucuronidase	+	3.2.1.31	* from API ID32STA
[Ref.: #68375]	L-arginine arylamidase	-		* from API ID32STA
[Ref.: #68375]	ornithine decarboxylase	-	4.1.1.17	* from API ID32STA
[Ref.: #68375]	urease	+	3.5.1.5	* from API ID32STA

API® ID32STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	Ornithine decarboxylaseODC	Esculin hydrolysisESC	Fermentation of D-glucoseGLU	Fermentation of D-fructoseFRU	Fermentation of D-mannoseMNE	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of trehaloseTRE	Fermentation of D-mannitolMAN	Fermentation of raffinoseRAF	Fermentation of D-riboseRIB	Fermentation of cellobioseCEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta-Galactosidasebeta GAL	L-arginine arylamidaseArgA	Alkaline phosphatasePAL	Pyrrolidonyl arylamidasePyrA	Novobiocin resistanceNOVO	Fermentation of sucroseSAC	Fermentation of N-acetyl-glucosamineNAG	Fermentation of turanoseTUR	Fermentation of arabinoseARA	beta-Glucuronidasebeta GUR
[Ref.: #23939]	6199	+	+	-	-	+	+	-	+	-	+	-	-	-	-	+	-	-	-	-	+/-	-	+	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23939]	Sample type/isolated from	ear swab of a patient suffering from acute otitis externa
[Ref.: #23939]	Geographic location (country and/or sea, region)	Texas
[Ref.: #23939]	Country	USA
[Ref.: #23939]	Country ISO 3 Code	USA
[Ref.: #23939]	Continent	North America

[Ref.: #62892]	Sample type/isolated from	Ear swab,acute otitis externa,5 year old male
[Ref.: #62892]	Sampling date	1998-05-01
[Ref.: #62892]	Geographic location (country and/or sea, region)	Texas
[Ref.: #62892]	Country	USA
[Ref.: #62892]	Country ISO 3 Code	USA
[Ref.: #62892]	Continent	North America
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Infection	#Inflammation	-
#Infection	#Patient	-
#Host Body-Site	#Organ	#Ear

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY953148 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	6
Soil Samples	23
Animal Samples	232
Plant Samples
Total Samples	261

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23939]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23939]	Staphylococcus petrasii subsp. croceilyticus strain MCC10046 16S ribosomal RNA gene, partial sequence	AY953148	1546	ENA	319942 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Staphylococcus croceilyticus CCM 8421	GCA_004684875	scaffold	GenBank	319942 tax ID	*
[Ref.: #66792]	Staphylococcus petrasii subsp. croceilyticus strain CCM 8421	319942.14	wgs	PATRIC	319942 tax ID	*
[Ref.: #66792]	Staphylococcus petrasii subsp. croceilyticus strain CCUG 62728	319942.6	wgs	PATRIC	319942 tax ID	*
[Ref.: #66792]	Staphylococcus croceilyticus CCUG 62728	GCA_002902575	scaffold	GenBank	319942 tax ID	*

[Ref.: #23939]

GC-content

35.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Staphylococcus croceilyticus CCM 8421 NCBI: GCA_004684875.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Staphylococcus croceilyticus CCM 8421 NCBI: GCA_004684875.1
[Ref.: #69480]	motile	no	89.195	no
[Ref.: #69480]	flagellated	no	91.506	no
[Ref.: #69480]	gram-positive	yes	90.097	no
[Ref.: #69480]	anaerobic	no	99.112	yes
[Ref.: #69480]	aerobic	yes	93.593	yes
[Ref.: #69480]	halophile	yes	95.607	no
[Ref.: #69480]	spore-forming	no	91.766	no
[Ref.: #69480]	glucose-util	yes	89.325	no
[Ref.: #69480]	thermophile	no	99.6	no
[Ref.: #69480]	glucose-ferment	yes	83.065	yes

Availability in culture collections External links

[Ref.: #23939]

Culture collection no.

DSM 17225, CCM 8421, CCUG 62728, MCC 10046

[Ref.: #90505]

SI-ID 400296

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23939

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17225

#62892 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62728

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68375

Automatically annotated from API ID32STA .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90505

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400296.1 )

* These data were automatically processed and therefore are not curated

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Staphylococcus croceilyticus CCM 8421

Staphylococcus croceilyticus CCM 8421

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