Strain identifier

BacDive ID: 132149

Type strain: Yes

Species: Staphylococcus croceilyticus

Strain history: <- D. W. Stroman, Alcon Research Ltd, Forth Worth, USA <- J. Dajcs; MCC 10046

NCBI tax ID(s): 1276936 (species)

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General

@ref: 23939

BacDive-ID: 132149

DSM-Number: 17225

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Staphylococcus croceilyticus DSM 17225 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from ear swab of a patient suffering from acute otitis externa.

NCBI tax id

  • NCBI tax id: 1276936
  • Matching level: species

strain history

  • @ref: 23939
  • history: <- D. W. Stroman, Alcon Research Ltd, Forth Worth, USA <- J. Dajcs; MCC 10046

doi: 10.13145/bacdive132149.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus croceilyticus
  • full scientific name: Staphylococcus croceilyticus (Pant??ek et al. 2013) Madhaiyan et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Staphylococcus petrasii subsp. croceilyticus

@ref: 23939

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus croceilyticus

full scientific name: Staphylococcus croceilyticus (Pant??ek et al. 2013) Madhaiyan et al. 2020

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
23939TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
23939COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
23939positivegrowth37mesophilic
62892positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62892
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no98
69480no99.859

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837516199urea+hydrolysis
6837529016arginine+hydrolysis
6837518257ornithine-degradation
683754853esculin-hydrolysis
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837516024D-mannose-fermentation
6837517306maltose+fermentation
6837517716lactose-fermentation
6837527082trehalose+fermentation
6837516899D-mannitol-fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837517632nitrate+reduction
6837517992sucrose+fermentation
6837559640N-acetylglucosamine-fermentation
6837532528turanose-fermentation
6837522599arabinose-fermentation

antibiotic resistance

  • @ref: 68375
  • ChEBI: 28368
  • metabolite: novobiocin
  • is antibiotic: yes
  • is sensitive: yes
  • sensitivity conc.: 1.8 µg

metabolite production

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68375beta-glucuronidase+3.2.1.31
68375alkaline phosphatase-3.1.3.1
68375L-arginine arylamidase-
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase+3.5.3.6
68375urease+3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
23939++--++-+-+----+----+/--+---+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
23939ear swab of a patient suffering from acute otitis externaTexasUSAUSANorth America
62892Ear swab,acute otitis externa,5 year old maleTexasUSAUSANorth America1998-05-01

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Infection#Inflammation
#Infection#Patient
#Host Body-Site#Organ#Ear

taxonmaps

  • @ref: 69479
  • File name: preview.99_178.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_3;97_3;98_3;99_178&stattab=map
  • Last taxonomy: Staphylococcus
  • 16S sequence: AY953148
  • Sequence Identity:
  • Total samples: 261
  • soil counts: 23
  • aquatic counts: 6
  • animal counts: 232

Safety information

risk assessment

  • @ref: 23939
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 23939
  • description: Staphylococcus petrasii subsp. croceilyticus strain MCC10046 16S ribosomal RNA gene, partial sequence
  • accession: AY953148
  • length: 1546
  • database: ena
  • NCBI tax ID: 319942

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Staphylococcus croceilyticus CCM 8421GCA_004684875scaffoldncbi319942
66792Staphylococcus petrasii subsp. croceilyticus strain CCM 8421319942.14wgspatric319942
66792Staphylococcus petrasii subsp. croceilyticus strain CCUG 62728319942.6wgspatric319942
66792Staphylococcus croceilyticus CCUG 62728GCA_002902575scaffoldncbi319942

GC content

  • @ref: 23939
  • GC-content: 35.5
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno98no
motileno89.195no
flagellatedno91.506no
gram-positiveyes90.097no
anaerobicno99.112yes
aerobicyes93.593yes
halophileyes95.607no
spore-formingno91.766no
glucose-utilyes89.325no
thermophileno99.6no
glucose-fermentyes83.065yes

External links

@ref: 23939

culture collection no.: DSM 17225, CCM 8421, CCUG 62728, MCC 10046

straininfo link

  • @ref: 90505
  • straininfo: 400296

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23939Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-17225Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17225)
62892Curators of the CCUGhttps://www.ccug.se/strain?id=62728Culture Collection University of Gothenburg (CCUG) (CCUG 62728)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68375Automatically annotated from API ID32STA
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
90505Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400296.1