Amycolatopsis lurida NA 3-TE-19 is a spore-forming bacterium that builds an aerial mycelium and produces antibiotic compounds.
antibiotic compound production spore-forming genome sequence 16S sequence Bacteria
SI-ID 887
| @ref 20215 |
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Last LPSN update
2026-02-09 11:21:04 |
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Pseudonocardiales |
| Family Pseudonocardiaceae |
| Genus Amycolatopsis |
| Species Amycolatopsis lurida |
| Full scientific name Amycolatopsis lurida (Lechevalier et al. 1986 ex Grundy et al. 1957) Stackebrandt et al. 2004 |
| Synonyms (1) |
| BacDive ID | Other strains from Amycolatopsis lurida (1) | Type strain |
|---|---|---|
| 104709 | A. lurida STH00238(ZIMET), HKI 0238 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 19542 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 19542 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 19542 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 19542 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 19542 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 19542 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 10681 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive  | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | obligate aerobe | 97.7 |
| @ref | Spore description | Type of spore | Spore formation | |
|---|---|---|---|---|
| 19542 | Spore surface: smooth, fragmentation: + | spore |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 19542 | NaCl | positive | maximum | 5 % |
| 67770 | Observationquinones: MK-9(H4), MK-9(H2) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 19542 | 22599 ChEBI | arabinose | + | ||
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 19542 | 62968 ChEBI | cellulose | - | ||
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 19542 | 28757 ChEBI | fructose | + | ||
| 68368 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20E |
| 19542 | 17234 ChEBI | glucose | + | ||
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 19542 | 29864 ChEBI | mannitol | + | ||
| 19542 | 17268 ChEBI | myo-inositol | - | ||
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 19542 | 16634 ChEBI | raffinose | - | ||
| 19542 | 26546 ChEBI | rhamnose | - | ||
| 19542 | 17992 ChEBI | sucrose | - | ||
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | + | hydrolysis | from API 20E |
| 19542 | 18222 ChEBI | xylose | - |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | + | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68368 | gelatinase | + | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | + | from API zym | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | - | from API zym |
Global distribution of 16S sequence AJ577997 (>99% sequence identity) for Amycolatopsis from Microbeatlas 
 Aquatic Samples |
30 |
 Soil Samples |
689 |
 Animal Samples |
79 |
 Plant Samples |
635 |
| Total Samples | 1433 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | IMG-taxon 2634166339 annotated assembly for Amycolatopsis lurida DSM 43134 | contig | GCA_900105055   | 31959.6  | 2634166339  | 31959 | 76.6 | |
| 67770 | ASM74946v3 assembly for Amycolatopsis lurida NRRL 2430 | contig | GCA_000749465 | 1460371.3 | 2648501726 | 1460371 | 59.43 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 10681 | Amycolatopsis orientalis subsp. lurida 16S rRNA gene, strain DSM 43134T | AJ577997 | 1397 |  | 31959 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Evaluation of herbicidal potential of Siderophores produced by Amycolatopsis lurida strain 407. | Eigharlou M, Javidpoor S, Mohammadi A, Khelghatibana F, Nami Y, Ma'mani L, Sadeghi A. | Sci Rep | 10.1038/s41598-024-77843-3 | 2024 | | |
| Enzymology | The genus Amycolatopsis: Indigenous plasmids, cloning vectors and gene transfer systems. | Malhotra S, Lal R. | Indian J Microbiol | 10.1007/s12088-007-0003-0 | 2007 | |
| Genetics | The taxonomy of Amycolatopsis lurida TRM64739 and Bacillus haynesii | Liu Z, Luo X, Xia Z, Wan C, Zhang L. | Front Microbiol | 2025 | | |
| A rare peptide scaffold in kineomicins, the glycopeptide antibiotics produced by Actinokineospora auranticolor DSM 44650. | Yushchuk O, Berini F, Zhong L, Ruckert-Reed C, Bernasconi E, Bartolone L, Busche T, Kalinowski J, Sussmuth RD, Marinelli F. | Commun Chem | 10.1038/s42004-025-01534-x | 2025 | | |
| Biosynthesis of antibiotic chuangxinmycin from Actinoplanes tsinanensis. | Shi Y, Jiang Z, Li X, Zuo L, Lei X, Yu L, Wu L, Jiang J, Hong B. | Acta Pharm Sin B | 10.1016/j.apsb.2017.07.005 | 2018 | | |
| Genetics | The taxonomy of Amycolatopsis lurida TRM64739 and Bacillus haynesii. | Liu ZW, Luo XR, Xia ZF, Wan CX, Zhang LL. | Front Microbiol | 10.3389/fmicb.2025.1571458 | 2025 | |
| Genetics | Genome-Guided Discovery of Natural Products through Multiplexed Low-Coverage Whole-Genome Sequencing of Soil Actinomycetes on Oxford Nanopore Flongle. | Rajwani R, Ohlemacher SI, Zhao G, Liu HB, Bewley CA. | mSystems | 10.1128/msystems.01020-21 | 2021 | |
| Enzymology | Use of magnetic beads to study the interaction of ristocetin with peptides and bacteria. | Sarakhanikhorami M, Lo RC, Gomez FA. | Bioanalysis | 10.4155/bio.09.67 | 2009 | |
| Metabolism | Antibiotic resistance mechanisms inform discovery: identification and characterization of a novel amycolatopsis strain producing ristocetin. | Truman AW, Kwun MJ, Cheng J, Yang SH, Suh JW, Hong HJ. | Antimicrob Agents Chemother | 10.1128/aac.03349-14 | 2014 | |
| Specific and Generic Immunorecognition of Glycopeptide Antibiotics Promoted by Unique and Multiple Orientations of Hapten. | Burkin MA, Galvidis IA, Eremin SA. | Biosensors (Basel) | 10.3390/bios9020052 | 2019 | | |
| Genetics | Revisiting the Taxonomic Status of the Biomedically and Industrially Important Genus Amycolatopsis, Using a Phylogenomic Approach. | Sangal V, Goodfellow M, Blom J, Tan GYA, Klenk HP, Sutcliffe IC. | Front Microbiol | 10.3389/fmicb.2018.02281 | 2018 | |
| Metabolism | Enhancing Ristomycin A Production by Overexpression of ParB-Like StrR Family Regulators Controlling the Biosynthesis Genes. | Liu K, Hu XR, Zhao LX, Wang Y, Deng Z, Tao M. | Appl Environ Microbiol | 10.1128/aem.01066-21 | 2021 | |
| Cloning of porcine platelet glycoprotein Ibalpha and comparison with the human homolog. | Shi M, Qiao J, Shen Y, Lu Y, Chen Y, Cheng J. | Comp Med | 2012 | | ||
| Genetics | Bacteriophages Isolated from Stunted Children Can Regulate Gut Bacterial Communities in an Age-Specific Manner. | Khan Mirzaei M, Khan MAA, Ghosh P, Taranu ZE, Taguer M, Ru J, Chowdhury R, Kabir MM, Deng L, Mondal D, Maurice CF. | Cell Host Microbe | 10.1016/j.chom.2020.01.004 | 2020 | |
| Metabolism | Overproduction of Ristomycin A by activation of a silent gene cluster in Amycolatopsis japonicum MG417-CF17. | Spohn M, Kirchner N, Kulik A, Jochim A, Wolf F, Muenzer P, Borst O, Gross H, Wohlleben W, Stegmann E. | Antimicrob Agents Chemother | 10.1128/aac.03512-14 | 2014 | |
| Genetics | Genome-Based Taxonomic Classification of the Phylum Actinobacteria. | Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M. | Front Microbiol | 10.3389/fmicb.2018.02007 | 2018 | |
| Genetics | Draft Genome Sequence of Amycolatopsis lurida NRRL 2430, Producer of the Glycopeptide Family Antibiotic Ristocetin. | Kwun MJ, Hong HJ | Genome Announc | 10.1128/genomeA.01050-14 | 2014 | |
| Phylogeny | PCR screening reveals unexpected antibiotic biosynthetic potential in Amycolatopsis sp. strain UM16. | Wood SA, Kirby BM, Goodwin CM, Le Roes M, Meyers PR | J Appl Microbiol | 10.1111/j.1365-2672.2006.03043.x | 2007 | |
| Phylogeny | Amycolatopsis minnesotensis sp. nov., isolated from a prairie soil. | Lee SD, Kinkel LL, Samac DA. | Int J Syst Evol Microbiol | 10.1099/ijs.0.63907-0 | 2006 | |
| Phylogeny | Amycolatopsis decaplanina sp. nov., a novel member of the genus with unusual morphology. | Wink J, Gandhi J, Kroppenstedt RM, Seibert G, Straubler B, Schumann P, Stackebrandt E. | Int J Syst Evol Microbiol | 10.1099/ijs.0.02586-0 | 2004 | |
| Phylogeny | Amycolatopsis pittospori sp. nov., an endophytic actinobacterium isolated from native apricot tree and genome mining revealed the biosynthesis potential as antibiotic producer and plant growth promoter. | Kaewkla O, Franco CMM | Antonie Van Leeuwenhoek | 10.1007/s10482-021-01519-5 | 2021 | |
| Phylogeny | Amycolatopsis magusensis sp. nov., isolated from soil. | Camas M, Sahin N, Sazak A, Sproer C, Klenk HP | Int J Syst Evol Microbiol | 10.1099/ijs.0.042770-0 | 2012 | |
| Phylogeny | Reclassification of Amycolatopsis orientalis subsp. lurida Lechevalier et al. 1986 as Amycolatopsis lurida sp. nov., comb. nov. | Stackebrandt E, Kroppenstedt RM, Wink J, Schumann P | Int J Syst Evol Microbiol | 10.1099/ijs.0.02937-0 | 2004 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive13214.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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