Name: Actinokineospora cianjurensis ID 03-0810
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13209

Type strain:

Species: Actinokineospora cianjurensis

Strain Designation: ID 03-0810

Culture col. no.: DSM 45657, BTCC B-558, NBRC 105526

Strain history: <- NBRC; NBRC 105526 <- P. Lisdiyanti (LIPI)and K. Ando(NITE); ID 03-0810

NCBI tax ID(s): 585224 (species)

SI-ID 401597

DSM 45657

Special Collections

Section

Actinokineospora cianjurensis ID 03-0810 is a spore-forming, Gram-positive, motile bacterium that was isolated from leaf-litter.

Gram-positive
motile
rod-shaped
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Actinokineospora*
	Species	**Actinokineospora cianjurensis**
	Full Scientific Name (LPSN)	Actinokineospora cianjurensis Lisdiyanti et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29447]	Gram stain	positive

[Ref.: #29447]	Cell width	1.5-2 µm

[Ref.: #29447]	Cell shape	rod-shaped

[Ref.: #29447]	Motility	yes

[Ref.: #29447]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18014]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #18014]

Culture medium growth

[Ref.: #18014]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18014]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #18014]	growth	28 °C
[Ref.: #29447]	growth	25-28 °C
[Ref.: #29447]	optimum	25-28 °C

	pH	Kind of pH		pH
[Ref.: #29447]			optimum	7
[Ref.: #29447]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %90.77

[Ref.: #29447]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29447]		NaCl		growth	1	%
[Ref.: #29447]		NaCl		optimum	1	%

[Ref.: #29447]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29447]	esculin ChEBI	+	hydrolysis
[Ref.: #29447]	fructose ChEBI	+	carbon source
[Ref.: #29447]	galactose ChEBI	+	carbon source
[Ref.: #29447]	glucose ChEBI	+	carbon source
[Ref.: #29447]	maltose ChEBI	+	carbon source
[Ref.: #29447]	mannose ChEBI	+	carbon source
[Ref.: #29447]	nitrate ChEBI	+	reduction
[Ref.: #29447]	sucrose ChEBI	+	carbon source
[Ref.: #29447]	trehalose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18014]	Sample type/isolated from	leaf-litter
[Ref.: #18014]	Geographic location (country and/or sea, region)	West Java, Cibodas Botanical Garden
[Ref.: #18014]	Country	Indonesia
[Ref.: #18014]	Country ISO 3 Code	IDN
[Ref.: #18014]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Plant

#Leaf (Phyllosphere)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB473945 (>99% sequence identity) for Actinokineospora from Microbeatlas

Aquatic Samples	7
Soil Samples	62
Animal Samples	12
Plant Samples	32
Total Samples	113

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18014]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18014]	Actinokineospora cianjurensis gene for 16S rRNA, partial sequence, strain: BTCC B-558	AB473945	1477	GenBank ENA	585224 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinokineospora cianjurensis DSM 45657	GCA_003663795	scaffold	GenBank ENA	585224 tax ID	*
[Ref.: #66792]	Actinokineospora cianjurensis strain DSM 45657	585224.3	wgs	PATRIC	585224 tax ID	*
[Ref.: #66792]	Actinokineospora cianjurensis DSM 45657	2734482175	draft	JGI IMG/M	585224 tax ID	*

[Ref.: #18014]

GC-content

70.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinokineospora cianjurensis DSM 45657 NCBI: GCA_003663795.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinokineospora cianjurensis DSM 45657 NCBI: GCA_003663795.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	85.731	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.151	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.77	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	84.342	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	59.833	no

Availability in culture collections External links

[Ref.: #18014]

Culture collection no.

DSM 45657, BTCC B-558, NBRC 105526

[Ref.: #82417]

SI-ID 401597

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinokineospora pegani sp. nov., an endophytic actinomycete isolated from the surface-sterilized root of Peganum harmala L.	Lei YJ, Xia ZF, Luo XX, Zhang LL	Int J Syst Evol Microbiol	10.1099/ijsem.0.004299	2020	*
Phylogeny	Actinokineospora baliensis sp. nov., Actinokineospora cibodasensis sp. nov. and Actinokineospora cianjurensis sp. nov., isolated from soil and plant litter.	Lisdiyanti P, Otoguro M, Ratnakomala S, Lestari Y, Hastuti RD, Triana E, Katsuhiko A, Widyastuti Y	Int J Syst Evol Microbiol	10.1099/ijs.0.013276-0	2009	*

References

#18014

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45657

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29447

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25853 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82417

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401597.1 )

#25853

IJSEM 2331 2010 ( DOI 10.1099/ijs.0.013276-0 , PubMed 19933586 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Actinokineospora cianjurensis in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Actinokineospora cianjurensis DSM 45657

Actinokineospora cianjurensis DSM 45657

Change proposal

Change proposal