Name: Actinokineospora riparia DSM 44259
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13203

Type strain:

Species: Actinokineospora riparia

Culture col. no.: DSM 44259, ATCC 49499, CCRC 13450, IFO 14541, JCM 7471, MTCC 2712, NBRC 14541, NCIMB 13255, NRRL B-16432, BCRC 13450, IMSNU 21272, KACC 20059, KCCM 40232, KCTC 9291, VKM Ac-1980

Strain history: IFO 14541 <-- T. Hasegawa C-39162.

NCBI tax ID(s): 39846 (species)

SI-ID 125804

ATCC 49499, IFO 14541, JCM 7471, DSM 44259, CCRC 13450, NCIMB 13255, NRRL B-16432, VKM Ac-1980, KCTC 9291, NBRC 14541, BCRC 13450, KACC 20059, DSM 33452

Section

Actinokineospora riparia DSM 44259 is a spore-forming, mesophilic bacterium that was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Actinokineospora*
	Species	**Actinokineospora riparia**
	Full Scientific Name (LPSN)	Actinokineospora riparia Hasegawa 1988

Information on morphological and physiological properties Morphology

[Ref.: #20033]	Colony color	Yellow orange (2000)
[Ref.: #20033]	Incubation period	10-14 days
[Ref.: #20033]	Cultivation medium used	ISP 2

[Ref.: #20033]	Multicellular complex forming ability	no
[Ref.: #20033]	Medium Name (multicellularity)	ISP 3

[Ref.: #20033]	Multicellular complex forming ability	no
[Ref.: #20033]	Medium Name (multicellularity)	ISP 4

[Ref.: #20033]	Multicellular complex forming ability	no
[Ref.: #20033]	Medium Name (multicellularity)	ISP 5

[Ref.: #20033]	Multicellular complex forming ability	no
[Ref.: #20033]	Medium Name (multicellularity)	ISP 6

[Ref.: #20033]	Multicellular complex forming ability	no
[Ref.: #20033]	Medium Name (multicellularity)	ISP 7

[Ref.: #20033]	Medium Name (multicellularity)	ISP 2

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11631]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #11631]

Culture medium growth

[Ref.: #11631]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11631]

Culture medium composition

expand / minimize

[Ref.: #20033]

Culture medium

ISP 2

[Ref.: #20033]

Culture medium growth

[Ref.: #20033]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #11631]	growth	28 °C
[Ref.: #20033]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #11631]	Temperature range	mesophilic
[Ref.: #20033]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #20033]	Spore description	Formation of spore chains, spore surface smooth
[Ref.: #20033]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #20033]		NaCl		growth	0	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #20033]	616	-	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11631]	Sample type/isolated from	soil
[Ref.: #11631]	Geographic location (country and/or sea, region)	Shiga Prefecture, Ado River
[Ref.: #11631]	Country	Japan
[Ref.: #11631]	Country ISO 3 Code	JPN
[Ref.: #11631]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil, the Ado River
[Ref.: #67770]	Geographic location (country and/or sea, region)	Shiga Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11631]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #20033]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	A.riparia (IFO 14541) 16S ribosomal RNA (partial)	X76953	1426	ENA	39846 tax ID	*
[Ref.: #20218]	Actinokineospora riparia strain NRRL B-16432T 16S ribosomal RNA gene, partial sequence	AF114802	1502	ENA	39846 tax ID	*

[Ref.: #11631]	GC-content	68.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #11631]	GC-content	72.0 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	72 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #11631]

Culture collection no.

DSM 44259, ATCC 49499, CCRC 13450, IFO 14541, JCM 7471, MTCC 2712, NBRC 14541, NCIMB 13255, NRRL B-16432, BCRC 13450, IMSNU 21272, KACC 20059, KCCM 40232, KCTC 9291, VKM Ac-1980

[Ref.: #82411]

SI-ID 125804

References

#11631

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44259

#20033

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#82411

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID125804.1 )

* These data were automatically processed and therefore are not curated

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