Strain identifier

BacDive ID: 13203

Type strain: Yes

Species: Actinokineospora riparia

Strain history: IFO 14541 <-- T. Hasegawa C-39162.

NCBI tax ID(s): 39846 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 11631

BacDive-ID: 13203

DSM-Number: 44259

keywords: 16S sequence, Bacteria, spore-forming, mesophilic

description: Actinokineospora riparia DSM 44259 is a spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 39846
  • Matching level: species

strain history

@refhistory
11631<- IFO <- T. Hasegawa, C-39162
67770IFO 14541 <-- T. Hasegawa C-39162.

doi: 10.13145/bacdive13203.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Actinokineospora
  • species: Actinokineospora riparia
  • full scientific name: Actinokineospora riparia Hasegawa 1988

@ref: 11631

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Actinokineospora

species: Actinokineospora riparia

full scientific name: Actinokineospora riparia Hasegawa 1988

type strain: yes

Morphology

colony morphology

  • @ref: 20033
  • colony color: Yellow orange (2000)
  • incubation period: 10-14 days
  • medium used: ISP 2

multicellular morphology

@refmedium nameforms multicellular complex
20033ISP 2
20033ISP 3no
20033ISP 4no
20033ISP 5no
20033ISP 6no
20033ISP 7no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11631GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
20033ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes

culture temp

@refgrowthtypetemperaturerange
11631positivegrowth28mesophilic
20033positiveoptimum28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

  • @ref: 20033
  • spore description: Formation of spore chains, spore surface smooth
  • spore formation: yes

halophily

  • @ref: 20033
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
20033-++++-+--++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
11631soilShiga Prefecture, Ado RiverJapanJPNAsia
67770Soil, the Ado RiverShiga Pref.JapanJPNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
116311Risk group (German classification)
200331German classification

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218A.riparia (IFO 14541) 16S ribosomal RNA (partial)X769531426ena39846
20218Actinokineospora riparia strain NRRL B-16432T 16S ribosomal RNA gene, partial sequenceAF1148021502ena39846

GC content

@refGC-contentmethod
1163168.9high performance liquid chromatography (HPLC)
1163172.0thermal denaturation, midpoint method (Tm)
6777072thermal denaturation, midpoint method (Tm)

External links

@ref: 11631

culture collection no.: DSM 44259, ATCC 49499, CCRC 13450, IFO 14541, JCM 7471, MTCC 2712, NBRC 14541, NCIMB 13255, NRRL B-16432, BCRC 13450, IMSNU 21272, KACC 20059, KCCM 40232, KCTC 9291, VKM Ac-1980

straininfo link

  • @ref: 82411
  • straininfo: 125804

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11631Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44259)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44259
20033Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM44259.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
82411Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID125804.1StrainInfo: A central database for resolving microbial strain identifiers