Name: Serratia marcescens PH1a
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131927

Type strain:

Species: Serratia marcescens

Strain Designation: PH1a

Culture col. no.: DSM 103302

Strain history: <- X. Y. Chan, Univ. of Malaya, Kuala Lumpur, Malaysia; PH1a

NCBI tax ID(s): 615 (species)

SI-ID 397620

DSM 103302

Other strains from Serratia marcescens

Section

Serratia marcescens PH1a is a mesophilic human pathogen that was isolated from digestive fluid of carnivorous plant Nepenthes.

human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Yersiniaceae*
	Genus	*Serratia*
	Species	**Serratia marcescens**
	Full Scientific Name (LPSN)	Serratia marcescens Bizio 1823 (Approved Lists 1980)

Synonym

Serratia marcescens subsp. sakuensis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23719]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #23719]

Culture medium growth

[Ref.: #23719]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23719]

Culture medium composition

expand / minimize

[Ref.: #23719]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #23719]

Culture medium growth

[Ref.: #23719]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23719]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23719]			growth	30 °C
[Ref.: #23719]			growth	28 °C

[Ref.: #23719]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	+	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #23719]	17976	+	-	+	+	+	-	+	-	-	-	+	+	+	+	+	-	-	+	+	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23719]	Sample type/isolated from	digestive fluid of carnivorous plant Nepenthes
[Ref.: #23719]	Host species	Nepenthes
[Ref.: #23719]	Geographic location (country and/or sea, region)	Pahang, Mossy Forest (N 04°31’, E 101°22’)
[Ref.: #23719]	Country	Malaysia
[Ref.: #23719]	Country ISO 3 Code	MYS
[Ref.: #23719]	Continent	Asia
[Ref.: #23719]	Geographic location	4.5167°/101.3670°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body Product	#Plant	#Digestive fluid

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF557600 (>99% sequence identity) for Serratia marcescens from Microbeatlas

Aquatic Samples	2336
Soil Samples	1270
Animal Samples	18103
Plant Samples	995
Total Samples	22704

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23719]	Pathogenicity (human)	yes
[Ref.: #23719]	Pathogenicity (animal)	yes
[Ref.: #23719]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23719]	Serratia marcescens strain PH1a 16S ribosomal RNA gene, partial sequence	KF557600	1506	ENA	615 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Serratia marcescens PH1a	GCA_000633555	contig	GenBank	1416761 tax ID	*
[Ref.: #66792]	Serratia marcescens PH1a	1416761.3	wgs	PATRIC	1416761 tax ID	*
[Ref.: #66792]	Serratia marcescens PH1a	2582581008	draft	JGI IMG/M	1416761 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Serratia marcescens PH1a PATRIC: 1416761.3
[Ref.: #69480]	motile	yes	87.535	no
[Ref.: #69480]	gram-positive	no	97.992	no
[Ref.: #69480]	anaerobic	no	97.692	no
[Ref.: #69480]	halophile	no	92.931	no
[Ref.: #69480]	spore-forming	no	94.749	no
[Ref.: #69480]	glucose-util	yes	94.732	no
[Ref.: #69480]	thermophile	no	99.341	yes
[Ref.: #69480]	aerobic	yes	90.792	no
[Ref.: #69480]	flagellated	no	57.405	no
[Ref.: #69480]	glucose-ferment	yes	90.569	yes

Availability in culture collections External links

[Ref.: #23719]

Culture collection no.

DSM 103302

[Ref.: #90314]

SI-ID 397620

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23719

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103302

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90314

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397620.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Serratia marcescens in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF