Strain identifier
BacDive ID: 131927
Type strain:
Species: Serratia marcescens
Strain Designation: PH1a
Strain history: <- X. Y. Chan, Univ. of Malaya, Kuala Lumpur, Malaysia; PH1a
NCBI tax ID(s): 615 (species)
General
@ref: 23719
BacDive-ID: 131927
DSM-Number: 103302
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, human pathogen
description: Serratia marcescens PH1a is a mesophilic human pathogen that was isolated from digestive fluid of carnivorous plant Nepenthes.
NCBI tax id
- NCBI tax id: 615
- Matching level: species
strain history
- @ref: 23719
- history: <- X. Y. Chan, Univ. of Malaya, Kuala Lumpur, Malaysia; PH1a
doi: 10.13145/bacdive131927.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Yersiniaceae
- genus: Serratia
- species: Serratia marcescens
- full scientific name: Serratia marcescens Bizio 1823 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Serratia marcescens subsp. sakuensis
@ref: 23719
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Yersiniaceae
genus: Serratia
species: Serratia marcescens
full scientific name: Serratia marcescens Bizio 1823
strain designation: PH1a
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
23719 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
23719 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
23719 | positive | growth | 30 | mesophilic |
23719 | positive | growth | 28 | mesophilic |
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | + | fermentation |
68368 | 28053 | melibiose | + | fermentation |
68368 | 17992 | sucrose | - | fermentation |
68368 | 62345 | L-rhamnose | - | fermentation |
68368 | 30911 | sorbitol | + | fermentation |
68368 | 17268 | myo-inositol | + | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | + | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | + | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | - | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | cytochrome oxidase | + | 1.9.3.1 |
68368 | gelatinase | + | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | + | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
23719 | + | - | + | + | + | - | + | - | - | - | + | + | + | + | + | - | - | + | + | + | + |
Isolation, sampling and environmental information
isolation
- @ref: 23719
- sample type: digestive fluid of carnivorous plant Nepenthes
- host species: Nepenthes
- geographic location: Pahang, Mossy Forest (N 04°31’, E 101°22’)
- country: Malaysia
- origin.country: MYS
- continent: Asia
- latitude: 4.5167
- longitude: 101.367
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body Product | #Plant | #Digestive fluid |
taxonmaps
- @ref: 69479
- File name: preview.99_289.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_244;99_289&stattab=map
- Last taxonomy: Serratia marcescens
- 16S sequence: KF557600
- Sequence Identity:
- Total samples: 22704
- soil counts: 1270
- aquatic counts: 2336
- animal counts: 18103
- plant counts: 995
Safety information
risk assessment
- @ref: 23719
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23719
- description: Serratia marcescens strain PH1a 16S ribosomal RNA gene, partial sequence
- accession: KF557600
- length: 1506
- database: ena
- NCBI tax ID: 615
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Serratia marcescens PH1a | GCA_000633555 | contig | ncbi | 1416761 |
66792 | Serratia marcescens PH1a | 1416761.3 | wgs | patric | 1416761 |
66792 | Serratia marcescens PH1a | 2582581008 | draft | img | 1416761 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 87.535 | no |
gram-positive | no | 97.992 | no |
anaerobic | no | 97.692 | no |
halophile | no | 92.931 | no |
spore-forming | no | 94.749 | no |
glucose-util | yes | 94.732 | no |
thermophile | no | 99.341 | yes |
aerobic | yes | 90.792 | no |
flagellated | no | 57.405 | no |
glucose-ferment | yes | 90.569 | yes |
External links
@ref: 23719
culture collection no.: DSM 103302
straininfo link
- @ref: 90314
- straininfo: 397620
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
23719 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103302 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103302) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68368 | Automatically annotated from API 20E | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
90314 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397620.1 |