Strain identifier

BacDive ID: 131927

Type strain: No

Species: Serratia marcescens

Strain Designation: PH1a

Strain history: <- X. Y. Chan, Univ. of Malaya, Kuala Lumpur, Malaysia; PH1a

NCBI tax ID(s): 615 (species)

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General

@ref: 23719

BacDive-ID: 131927

DSM-Number: 103302

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, human pathogen

description: Serratia marcescens PH1a is a mesophilic human pathogen that was isolated from digestive fluid of carnivorous plant Nepenthes.

NCBI tax id

  • NCBI tax id: 615
  • Matching level: species

strain history

  • @ref: 23719
  • history: <- X. Y. Chan, Univ. of Malaya, Kuala Lumpur, Malaysia; PH1a

doi: 10.13145/bacdive131927.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Yersiniaceae
  • genus: Serratia
  • species: Serratia marcescens
  • full scientific name: Serratia marcescens Bizio 1823 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Serratia marcescens subsp. sakuensis

@ref: 23719

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Yersiniaceae

genus: Serratia

species: Serratia marcescens

full scientific name: Serratia marcescens Bizio 1823

strain designation: PH1a

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
23719COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
23719NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
23719positivegrowth30mesophilic
23719positivegrowth28mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
23719+-+++-+---+++++--++++

Isolation, sampling and environmental information

isolation

  • @ref: 23719
  • sample type: digestive fluid of carnivorous plant Nepenthes
  • host species: Nepenthes
  • geographic location: Pahang, Mossy Forest (N 04°31’, E 101°22’)
  • country: Malaysia
  • origin.country: MYS
  • continent: Asia
  • latitude: 4.5167
  • longitude: 101.367

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body Product#Plant#Digestive fluid

taxonmaps

  • @ref: 69479
  • File name: preview.99_289.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_244;99_289&stattab=map
  • Last taxonomy: Serratia marcescens
  • 16S sequence: KF557600
  • Sequence Identity:
  • Total samples: 22704
  • soil counts: 1270
  • aquatic counts: 2336
  • animal counts: 18103
  • plant counts: 995

Safety information

risk assessment

  • @ref: 23719
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 23719
  • description: Serratia marcescens strain PH1a 16S ribosomal RNA gene, partial sequence
  • accession: KF557600
  • length: 1506
  • database: ena
  • NCBI tax ID: 615

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Serratia marcescens PH1aGCA_000633555contigncbi1416761
66792Serratia marcescens PH1a1416761.3wgspatric1416761
66792Serratia marcescens PH1a2582581008draftimg1416761

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes87.535no
gram-positiveno97.992no
anaerobicno97.692no
halophileno92.931no
spore-formingno94.749no
glucose-utilyes94.732no
thermophileno99.341yes
aerobicyes90.792no
flagellatedno57.405no
glucose-fermentyes90.569yes

External links

@ref: 23719

culture collection no.: DSM 103302

straininfo link

  • @ref: 90314
  • straininfo: 397620

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23719Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103302Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103302)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90314Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397620.1