[Ref.: #9144] |
Sample type/isolated from |
pond water |
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[Ref.: #44400] |
Sample type/isolated from |
Water,pond |
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[Ref.: #67770] |
Sample type/isolated from |
Pond water |
|
[Ref.: #120785] |
Sample type/isolated from |
Environment, Pond water |
* marker position based on {}
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Isolation sources categories |
#Environmental |
#Aquatic |
#Pond (small) |
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Information on genomic background e.g. entries in nucleic sequence databass Sequence information
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16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
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Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #20218] |
Serratia marcescens subsp. marcescens gene for 16S rRNA, partial sequence, strain: NBRC 102204 |
AB681729 |
1467 |
|
211759 tax ID |
* |
[Ref.: #20218] |
Serratia marcescens partial 16S rRNA gene, strain ATCC 13880 |
FM207088 |
389 |
|
911022 tax ID |
* |
[Ref.: #20218] |
Serratia marcescens subsp. marcescens strain ATCC 13880 clone a1 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; 23S ribosomal RNA gene, partial sequence; and tRNA-Glu gene, complete sequence |
GQ332578 |
403 |
|
911022 tax ID |
* |
[Ref.: #20218] |
Serratia marcescens subsp. marcescens strain ATCC 13880 clone b3 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; 23S ribosomal RNA gene, partial sequence; and tRNA-Ile and tRNA-Ala genes, complete sequence |
GQ332579 |
471 |
|
911022 tax ID |
* |
[Ref.: #20218] |
Serratia marcescens 16S ribosomal RNA |
M59160 |
1543 |
|
615 tax ID |
* |
[Ref.: #20218] |
Serratia marcescens 16S rRNA gene (strain DSM 30121) |
AJ233431 |
1505 |
|
911022 tax ID |
* |
[Ref.: #20218] |
Serratia marcescens subsp. marcescens gene for 16S rRNA, partial sequence, strain: JCM 1239 |
AB594756 |
1464 |
|
911022 tax ID |
* |
|
[Ref.: #67770] |
GC-content |
60.9 mol% |
thermal denaturation, midpoint method (Tm) |
[Ref.: #67770] |
GC-content |
57.5 mol% |
thermal denaturation, midpoint method (Tm) |
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Availability in culture collections External links
[Ref.: #9144] |
Culture collection no. |
DSM 30121, ATCC 13880, CCM 303, DSM 47, NCDC 813-60, NCIB 9155, NCTC 10211, CCUG 1647, JCM 1239, BCRC 10948, CDC 813-60, CECT 846, CGMCC 1.2818, CIP 103235, HAMBI 1286, IAM 12142, KCTC 12457, LMG 2792, NBRC 102204, NCIMB 9155, NRRL B-2544, VKM B-1248, VTT E-97865 |
[Ref.: #74657] |
SI-ID 4950
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* |
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Literature: |
Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries. |
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|
Title |
Authors |
Journal |
DOI |
Year |
|
Pathogenicity |
Ultrasound assisted-phytofabricated Fe3O4 NPs with antioxidant properties and antibacterial effects on growth, biofilm formation, and spreading ability of multidrug resistant bacteria. |
Alavi M, Karimi N |
Artif Cells Nanomed Biotechnol |
10.1080/21691401.2019.1624560 |
2019 |
* |
Pathogenicity |
Antagonistic activities of some probiotic lactobacilli culture supernatant on Serratia marcescens swarming motility and antibiotic resistance. |
Vahedi-Shahandashti R, Kasra-Kermanshahi R, Shokouhfard M, Ghadam P, Feizabadi MM, Teimourian S |
Iran J Microbiol |
|
2017 |
* |
Enzymology |
Structure-guided design of Serratia marcescens short-chain dehydrogenase/reductase for stereoselective synthesis of (R)-phenylephrine. |
Liu JS, Kuan YC, Tsou Y, Lin TY, Hsu WH, Yang MT, Lin JY, Wang WC |
Sci Rep |
10.1038/s41598-018-19235-y |
2018 |
* |
Enzymology |
Enantioselective synthesis of (R)-phenylephrine by Serratia marcescens BCRC10948 cells that homologously express SM_SDR. |
Kuan YC, Xu YB, Wang WC, Yang MT |
Enzyme Microb Technol |
10.1016/j.enzmictec.2017.12.001 |
2017 |
* |
Metabolism |
Effects of temperature, pH and NaCl content on in vitro putrescine and cadaverine production through the growth of Serratia marcescens CCM 303. |
Bubelova Z, Bunka F, Tatakova M, Stajnochova K, Purevdorj K, Bunkova L |
J Environ Sci Health B |
10.1080/03601234.2015.1058097 |
2015 |
* |
Metabolism |
Stereoselective synthesis of (R)-phenylephrine using recombinant Escherichia coli cells expressing a novel short-chain dehydrogenase/reductase gene from Serratia marcescens BCRC 10948. |
Peng GJ, Kuan YC, Chou HY, Fu TK, Lin JS, Hsu WH, Yang MT |
J Biotechnol |
10.1016/j.jbiotec.2013.11.011 |
2013 |
* |
Phylogeny |
Pseudomonas putida Strain FStm2 Isolated from Shark Skin: A Potential Source of Bacteriocin. |
Ahmad A, Hamid R, Dada AC, Usup G |
Probiotics Antimicrob Proteins |
10.1007/s12602-013-9140-4 |
2013 |
* |
Phylogeny |
Isolation and analyses of uranium tolerant Serratia marcescens strains and their utilization for aerobic uranium U(VI) bioadsorption. |
Kumar R, Acharya C, Joshi SR |
J Microbiol |
10.1007/s12275-011-0366-0 |
2011 |
* |
Pathogenicity |
Importance of rub and rinse in use of multipurpose contact lens solution. |
Zhu H, Bandara MB, Vijay AK, Masoudi S, Wu D, Willcox MD |
Optom Vis Sci |
10.1097/OPX.0b013e31821bf976 |
2011 |
* |
Pathogenicity |
Removal of biofilm from contact lens storage cases. |
Wu YT, Zhu H, Willcox M, Stapleton F |
Invest Ophthalmol Vis Sci |
10.1167/iovs.10-5796 |
2010 |
* |
Metabolism |
Tigecycline resistance in Serratia marcescens associated with up-regulation of the SdeXY-HasF efflux system also active against ciprofloxacin and cefpirome. |
Hornsey M, Ellington MJ, Doumith M, Hudson S, Livermore DM, Woodford N |
J Antimicrob Chemother |
10.1093/jac/dkp475 |
2010 |
* |
Phylogeny |
Serratia nematodiphila sp. nov., associated symbiotically with the entomopathogenic nematode Heterorhabditidoides chongmingensis (Rhabditida: Rhabditidae). |
Zhang CX, Yang SY, Xu MX, Sun J, Liu H, Liu JR, Liu H, Kan F, Sun J, Lai R, Zhang KY |
Int J Syst Evol Microbiol |
10.1099/ijs.0.65718-0 |
2009 |
* |
Cultivation |
Media optimization studies for Serratiopeptidase production from Serratia marcescens ATCC 13880. |
Badhe RV, Nanda RK, Kulkarni MB, Bhujbal MN, Patil PS, Badhe SR |
Hindustan Antibiot Bull |
|
2009 |
* |
Metabolism |
Fluoroquinolone resistance of Serratia marcescens: sucrose, salicylate, temperature, and pH induction of phenotypic resistance. |
Begic S, Worobec EA |
Can J Microbiol |
10.1139/W07-097 |
2007 |
* |
Pathogenicity |
Efficacy of contact lens multipurpose solutions against serratia marcescens. |
Hume EB, Zhu H, Cole N, Huynh C, Lam S, Willcox MD |
Optom Vis Sci |
10.1097/OPX.0b013e3180465543 |
2007 |
* |
Metabolism |
Chemo-enzymatic synthesis of 2'-O-methoxyethyl ribonucleosides using a phosphodiesterase from Serratia marcescens. |
Marais G, Ghisalba O |
Appl Microbiol Biotechnol |
10.1007/s00253-004-1718-z |
2004 |
* |
Enzymology |
Characterization of Serratia marcescens surviving in disinfecting footbaths. |
Langsrud S, Moretro T, Sundheim G |
J Appl Microbiol |
10.1046/j.1365-2672.2003.01968.x |
2003 |
* |
Pathogenicity |
[Post-antibiotic effect of imipenem, amikacin and ciprofloxacin against various strains of Serratia marcescens]. |
Bollet C, Mallet MN, Bouchemal H, de Micco P |
Pathol Biol (Paris) |
|
1990 |
* |
Enzymology |
Inducible xylitol dehydrogenases in enteric bacteria. |
Doten RC, Mortlock RP |
J Bacteriol |
10.1128/jb.162.2.845-848.1985 |
1985 |
* |
Phylogeny |
Taxonomy of the genus Serratia. |
Grimont PA, Grimont F, De Rosnay HL |
J Gen Microbiol |
10.1099/00221287-98-1-39 |
1977 |
* |
|
Quorum sensing-regulated functions of Serratia marcescens are reduced by eugenol. |
Fekrirad Z, Gattali B, Kashef N |
Iran J Microbiol |
10.18502/ijm.v12i5.4607 |
2020 |
* |
|
Optimization of prodigiosin biosynthesis by Serratia marcescens using unconventional bioresources. |
Bhagwat A, Padalia U |
J Genet Eng Biotechnol |
10.1186/s43141-020-00045-7 |
2020 |
* |
|
Proteomic profiling of Serratia marcescens by high-resolution mass spectrometry. |
Gangadharappa BS, Rajashekarappa S, Sathe G |
Bioimpacts |
10.34172/bi.2020.15 |
2020 |
* |
|
Microbial associates of the southern mole cricket (Scapteriscus borellii) are highly pathogenic. |
Aryal SK, Carter-House D, Stajich JE, Dillman AR |
J Invertebr Pathol |
10.1016/j.jip.2017.09.008 |
2017 |
* |
|
Genome Assembly of Serratia marcescens Type Strain ATCC 13880. |
Daligault HE, Davenport KW, Minogue TD, Broomall SM, Bruce DC, Chain PS, Coyne SR, Gibbons HS, Jaissle J, Rosenzweig CN, Scholz M, Teshima H, Johnson SL |
Genome Announc |
10.1128/genomeA.00967-14 |
2014 |
* |
|
- References
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#9144 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 30121
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#41569 |
; Curators of the CIP;
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-
#44400 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 1647
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#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
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#68368 |
Automatically annotated from API 20E .
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#68371 |
Automatically annotated from API 50CH acid .
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#68382 |
Automatically annotated from API zym .
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#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
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#74657 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID4950.1 )
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#120785 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 103235
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- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
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