Name: Photobacterium galatheae S2753
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131557

Type strain:

Species: Photobacterium galatheae

Strain Designation: S2753

Culture col. no.: DSM 100496, LMG 28894

Strain history: <- H. Machado, Technical University of Denmark, Systems Biology, Kgs. Lyngby, Denmark; S2753 <- L. Gram, Systems Biology, Technical University Denmark

NCBI tax ID(s): 1654360 (species)

SI-ID 398605

DSM 100496

Special Collections

DSMZ

Section

Photobacterium galatheae S2753 is a bacterium that was isolated from surface of a mussel.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Photobacterium*
	Species	**Photobacterium galatheae**
	Full Scientific Name (LPSN)	Photobacterium galatheae Machado et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22784]

Culture medium

MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)

[Ref.: #22784]

Culture medium growth

[Ref.: #22784]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #22784]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22784]

Culture medium growth

[Ref.: #22784]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22784]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22784]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	nitrate ChEBI	+	reduction	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	dinitrogen ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E
[Ref.: #68368]	nitrite ChEBI	yes	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	+	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #22784]	18176	-	-	-	-	+	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #22784]	16649	-	-	-	-	+	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22784]	Sample type/isolated from	surface of a mussel
[Ref.: #22784]	Geographic location (country and/or sea, region)	Solomon Sea (9° 06.480' S 156° 51.570' E)
[Ref.: #22784]	Country	Solomon Islands
[Ref.: #22784]	Country ISO 3 Code	SLB
[Ref.: #22784]	Continent	Australia and Oceania
[Ref.: #22784]	Geographic location	-9.1080°/156.8590°
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR704916 (>99% sequence identity) for Photobacterium galatheae subclade from Microbeatlas

Aquatic Samples	57
Soil Samples	12
Animal Samples	2
Plant Samples	2
Total Samples	73

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22784]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22784]	Photobacterium galatheae strain S2753 16S ribosomal RNA gene, partial sequence	KR704916	1540	GenBank ENA	1654360 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Photobacterium galatheae S2753	GCA_000695255	contig	GenBank ENA	1654360 tax ID	*
[Ref.: #66792]	Photobacterium galatheae S2753	2711768099	draft	JGI IMG/M	1654360 tax ID	*
[Ref.: #66792]	Photobacterium galatheae DSM 100496	GCA_023653475	contig	GenBank ENA	1654360 tax ID	*

[Ref.: #22784]

GC-content

49.5 mol%

Availability in culture collections External links

[Ref.: #22784]

Culture collection no.

DSM 100496, LMG 28894

[Ref.: #89971]

SI-ID 398605

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Holomycin, an Antibiotic Secondary Metabolite, Is Required for Biofilm Formation by the Native Producer Photobacterium galatheae S2753.	Zhang SD, Isbrandt T, Lindqvist LL, Larsen TO, Gram L	Appl Environ Microbiol	10.1128/AEM.00169-21	2021	*
Phylogeny	Photobacterium salinisoli sp. nov., isolated from a sulfonylurea herbicide-degrading consortium enriched with saline soil.	Li M, Kong D, Wang Y, Ma Q, Han X, Zhou Y, Jiang X, Zhang Y, Ruan Z, Zhang Q	Int J Syst Evol Microbiol	10.1099/ijsem.0.003705	2019	*
Transcriptome	Growth on Chitin Impacts the Transcriptome and Metabolite Profiles of Antibiotic-Producing Vibrio coralliilyticus S2052 and Photobacterium galatheae S2753.	Giubergia S, Phippen C, Nielsen KF, Gram L	mSystems	10.1128/mSystems.00141-16	2017	*
Enzymology	Biological Potential of Chitinolytic Marine Bacteria.	Paulsen SS, Andersen B, Gram L, Machado H	Mar Drugs	10.3390/md14120230	2016	*
Phylogeny	Photobacterium galatheae sp. nov., a bioactive bacterium isolated from a mussel in the Solomon Sea.	Machado H, Giubergia S, Mateiu RV, Gram L	Int J Syst Evol Microbiol	10.1099/ijsem.0.000603	2015	*
Metabolism	Solonamides, a Group of Cyclodepsipeptides, Influence Motility in the Native Producer Photobacterium galatheae S2753.	Zhang SD, Lindqvist LL, Isbrandt T, Borre IL, Wibowo M, Nielsen MW, Ding L, Larsen TO, Gram L	Appl Environ Microbiol	10.1128/aem.01105-22	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22784

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100496

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89971

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398605.1 )

* These data were automatically processed and therefore are not curated

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