Name: Lacinutrix venerupis DSM 28755
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131558

Type strain:

Species: Lacinutrix venerupis

Culture col. no.: DSM 28755, CECT 8573, KCTC 52192, Cmf 20.8

Strain history: <- DSM <- J. L. Romalde, Univ. of Santiago de Compostela, Spain, Cmf 20.8 <- A. L. Dieguez

NCBI tax ID(s): 1486034 (species)

SI-ID 397414

DSM 28755

Other strains from Lacinutrix venerupis

L. venerupis Rd 23.41, DSM 28756, CECT 8574

Section

Lacinutrix venerupis DSM 28755 is an aerobe, mesophilic bacterium that was isolated from healthy reared carpet-shell clam .

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Lacinutrix*
	Species	**Lacinutrix venerupis**
	Full Scientific Name (LPSN)	Lacinutrix venerupis Lasa et al. 2016

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22785]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #22785]

Culture medium growth

[Ref.: #22785]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22785]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22785]			growth	25 °C
[Ref.: #67771]			growth	25 °C

[Ref.: #22785]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22785]	Sample type/isolated from	healthy reared carpet-shell clam (Venerupis decussata)
[Ref.: #22785]	Host species	Venerupis decussata
[Ref.: #22785]	Geographic location (country and/or sea, region)	north-western coast, Galicia, Camarinas (43°20'50''N, 8°38'47''W)
[Ref.: #22785]	Country	Spain
[Ref.: #22785]	Country ISO 3 Code	ESP
[Ref.: #22785]	Continent	Europe
[Ref.: #22785]	Geographic location	43.3472°/-8.6464°

[Ref.: #67771]	Sample type/isolated from	From healthy reared carpet-shell clam (Venerupis decussata)
[Ref.: #67771]	Geographic location (country and/or sea, region)	north-western coast, Galicia
[Ref.: #67771]	Country	Spain
[Ref.: #67771]	Country ISO 3 Code	ESP
[Ref.: #67771]	Continent	Europe
[Ref.: #67771]	Geographic location	43.3472°/-8.6464°
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HG970752 (>99% sequence identity) for Lacinutrix venerupis from Microbeatlas

Aquatic Samples	124
Soil Samples	6
Animal Samples	108
Plant Samples	3
Total Samples	241

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22785]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22785]	Lacinutrix venerupis partial 16S rRNA gene, type strain Cmf 20.8T	HG970752	1337	ENA	1486034 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lacinutrix venerupis DSM 28755	GCA_003663945	scaffold	GenBank	1486034 tax ID	*
[Ref.: #66792]	Lacinutrix venerupis strain DSM 28755	1486034.7	wgs	PATRIC	1486034 tax ID	*
[Ref.: #66792]	Lacinutrix venerupis DSM 28755	2734482143	draft	JGI IMG/M	1486034 tax ID	*

[Ref.: #22785]

GC-content

34.1 mol%

fluorimetric

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lacinutrix venerupis DSM 28755 NCBI: GCA_003663945.1
[Ref.: #69480]	motile	no	86.988	no
[Ref.: #69480]	flagellated	no	93.664	no
[Ref.: #69480]	gram-positive	no	98.244	no
[Ref.: #69480]	anaerobic	no	99.281	no
[Ref.: #69480]	aerobic	yes	90.738	yes
[Ref.: #69480]	halophile	no	65.944	no
[Ref.: #69480]	spore-forming	no	95.711	no
[Ref.: #69480]	glucose-util	yes	79.912	no
[Ref.: #69480]	thermophile	no	99.561	yes
[Ref.: #69480]	glucose-ferment	no	91.99	no

Availability in culture collections External links

[Ref.: #22785]

Culture collection no.

DSM 28755, CECT 8573, KCTC 52192, Cmf 20.8

[Ref.: #89972]

SI-ID 397414

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phenotypic and Molecular Characterization of Lacinutrix venerupis Isolated from Atlantic Horse Mackerel Trachurus trachurus.	Fernandez-Alvarez C, Santos Y	J Aquat Anim Health	10.1002/aah.10085	2019	*
Phylogeny	Description of Lacinutrix venerupis sp. nov.: a novel bacterium associated with reared clams.	Lasa A, Dieguez AL, Romalde JL	Syst Appl Microbiol	10.1016/j.syapm.2014.10.012	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22785

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28755

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89972

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397414.1 )

* These data were automatically processed and therefore are not curated

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