Name: Bradyrhizobium subterraneum 58 2-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131456

Type strain:

Species: Bradyrhizobium subterraneum

Strain Designation: 58 2-1

Culture col. no.: DSM 100298, LMG 28792, NTCCM 0016

Strain history: <- B. Reinhold-Hurek, Univ. Bremen, Germany; 58 2-1 <- J. L. Grönemeyer

NCBI tax ID(s): 1549945 (species)

SI-ID 396452

LMG 28792, DSM 100298

Special Collections

DSMZ

Section

Bradyrhizobium subterraneum 58 2-1 is a bacterium that was isolated from effictive nodule of Arachis hypogaea .

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Nitrobacteraceae*
	Genus	*Bradyrhizobium*
	Species	**Bradyrhizobium subterraneum**
	Full Scientific Name (LPSN)	Bradyrhizobium subterraneum Grönemeyer et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22683]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98)

[Ref.: #22683]

Culture medium growth

[Ref.: #22683]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22683]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22683]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22683]	Sample type/isolated from	effictive nodule of Arachis hypogaea (peanut)
[Ref.: #22683]	Host species	Arachis hypogaea
[Ref.: #22683]	Geographic location (country and/or sea, region)	Kavango region, near Mashare
[Ref.: #22683]	Country	Namibia
[Ref.: #22683]	Country ISO 3 Code	NAM
[Ref.: #22683]	Continent	Africa
[Ref.: #22683]	Geographic location	17.8982°/19.9007°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP308152 (>99% sequence identity) for Bradyrhizobium from Microbeatlas

Aquatic Samples	2827
Soil Samples	5001
Animal Samples	4320
Plant Samples	739
Total Samples	12887

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22683]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22683]	Bradyrhizobium subterraneum strain 58 2-1 16S ribosomal RNA gene, partial sequence	KP308152	1334	GenBank ENA	1549945 tax ID

[Ref.: #22683]

GC-content

64.7 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #22683]

Culture collection no.

DSM 100298, LMG 28792, NTCCM 0016

[Ref.: #89876]

SI-ID 396452

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bradyrhizobium vignae sp. nov., a nitrogen-fixing symbiont isolated from effective nodules of Vigna and Arachis.	Gronemeyer JL, Hurek T, Bunger W, Reinhold-Hurek B	Int J Syst Evol Microbiol	10.1099/ijsem.0.000674	2015	*
Phylogeny	Bradyrhizobium subterraneum sp. nov., a symbiotic nitrogen-fixing bacterium from root nodules of groundnuts.	Gronemeyer JL, Chimwamurombe P, Reinhold-Hurek B	Int J Syst Evol Microbiol	10.1099/ijsem.0.000403	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22683

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100298

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89876

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396452.1 )

* These data were automatically processed and therefore are not curated

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