Strain identifier
BacDive ID: 131456
Type strain: 
Species: Bradyrhizobium subterraneum
Strain Designation: 58 2-1
Strain history: <- B. Reinhold-Hurek, Univ. Bremen, Germany; 58 2-1 <- J. L. Grönemeyer
NCBI tax ID(s): 1549945 (species)
version 9 (current version)
General
@ref: 22683
BacDive-ID: 131456
DSM-Number: 100298
keywords: 16S sequence, Bacteria
description: Bradyrhizobium subterraneum 58 2-1 is a bacterium that was isolated from effictive nodule of Arachis hypogaea .
NCBI tax id
- NCBI tax id: 1549945
- Matching level: species
strain history
- @ref: 22683
- history: <- B. Reinhold-Hurek, Univ. Bremen, Germany; 58 2-1 <- J. L. Grönemeyer
doi: 10.13145/bacdive131456.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Nitrobacteraceae
- genus: Bradyrhizobium
- species: Bradyrhizobium subterraneum
- full scientific name: Bradyrhizobium subterraneum Grönemeyer et al. 2015
@ref: 22683
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Nitrobacteraceae
genus: Bradyrhizobium
species: Bradyrhizobium subterraneum
full scientific name: Bradyrhizobium subterraneum Grönemeyer et al. 2015
strain designation: 58 2-1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22683
- name: RHIZOBIUM MEDIUM (DSMZ Medium 98)
- growth: yes
- link: https://mediadive.dsmz.de/medium/98
- composition: Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water
culture temp
- @ref: 22683
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 22683
- sample type: effictive nodule of Arachis hypogaea (peanut)
- host species: Arachis hypogaea
- geographic location: Kavango region, near Mashare
- country: Namibia
- origin.country: NAM
- continent: Africa
- latitude: 17.8982
- longitude: 19.9007
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root nodule |
taxonmaps
- @ref: 69479
- File name: preview.99_445.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_297;97_329;98_370;99_445&stattab=map
- Last taxonomy: Bradyrhizobium
- 16S sequence: KP308152
- Sequence Identity:
- Total samples: 12887
- soil counts: 5001
- aquatic counts: 2827
- animal counts: 4320
- plant counts: 739
Safety information
risk assessment
- @ref: 22683
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22683
- description: Bradyrhizobium subterraneum strain 58 2-1 16S ribosomal RNA gene, partial sequence
- accession: KP308152
- length: 1334
- database: nuccore
- NCBI tax ID: 1549945
GC content
- @ref: 22683
- GC-content: 64.7
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 22683
culture collection no.: DSM 100298, LMG 28792, NTCCM 0016
straininfo link
- @ref: 89876
- straininfo: 396452
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26198108 | Bradyrhizobium subterraneum sp. nov., a symbiotic nitrogen-fixing bacterium from root nodules of groundnuts. | Gronemeyer JL, Chimwamurombe P, Reinhold-Hurek B | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000403 | 2015 | Arachis/*microbiology, Bacterial Typing Techniques, Base Composition, Bradyrhizobium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Molecular Sequence Data, Namibia, Nitrogen, *Nitrogen Fixation, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Symbiosis | Genetics |
| Phylogeny | 26463703 | Bradyrhizobium vignae sp. nov., a nitrogen-fixing symbiont isolated from effective nodules of Vigna and Arachis. | Gronemeyer JL, Hurek T, Bunger W, Reinhold-Hurek B | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000674 | 2015 | Arachis/*microbiology, Bacterial Typing Techniques, Base Composition, Bradyrhizobium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fabaceae/*microbiology, Fatty Acids/chemistry, Genes, Bacterial, Molecular Sequence Data, Namibia, *Nitrogen Fixation, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/microbiology, Sequence Analysis, DNA, *Symbiosis | Genetics |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22683 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100298 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100298) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89876 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396452.1 |