Name: Streptomyces bohaiensis 11A07
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131438

Type strain:

Species: Streptomyces bohaiensis

Strain Designation: 11A07

Culture col. no.: DSM 42125, CCTCC AA 2013020, JCM 19630, KCTC 29263

Strain history: <- Wenjun Li,China

NCBI tax ID(s): 1431344 (species)

SI-ID 397466

DSM 42125

Special Collections

Section

Streptomyces bohaiensis 11A07 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from young Scomberomorus niphonius .

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces bohaiensis**
	Full Scientific Name (LPSN)	Streptomyces bohaiensis Pan et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %92.25

[Ref.: #69480]	Motility	no Confidence in %90

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #22665]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

[Ref.: #67770]	Observation	quinones: MK-9(H₄), MK-9(H₆), MK-9(H₂)
[Ref.: #67771]	Observation	quinones: MK-9(H2), MK-9(H4), MK-9(H6)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22665]	Sample type/isolated from	young Scomberomorus niphonius (pelagic fish)
[Ref.: #22665]	Host species	Scomberomorus niphonius
[Ref.: #22665]	Geographic location (country and/or sea, region)	eastern Liaoning Peninsula, Bohai Sea (39°20' N, 122°17' E)
[Ref.: #22665]	Country	China
[Ref.: #22665]	Country ISO 3 Code	CHN
[Ref.: #22665]	Continent	Asia
[Ref.: #22665]	Geographic location	39.3333°/122.2830°

[Ref.: #67770]	Sample type/isolated from	Young fish (Scomberomorus niphonius) from the Bohai Sea
[Ref.: #67770]	Host species	Scomberomorus niphonius
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From young marine fish, `Scomberomorus niphonius` (pelagic fish)
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	39.3333°/122.2830°
* marker position based on {}

Isolation sources categories

#Host

#Fishes

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22665]	Streptomyces bohaiensis strain 11A07 16S ribosomal RNA gene, partial sequence	KF682221	1520	GenBank ENA	1431344 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces bohaiensis 11A07	GCA_012033785	scaffold	GenBank ENA	1431344 tax ID	*
[Ref.: #66792]	Streptomyces bohaiensis strain 11A07	1431344.3	wgs	PATRIC	1431344 tax ID	*

[Ref.: #22665]	GC-content	71.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	71.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces bohaiensis 11A07 NCBI: GCA_012033785.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces bohaiensis 11A07 NCBI: GCA_012033785.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.25	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.027	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.774	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	85.081	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.636	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90	no

Availability in culture collections External links

[Ref.: #22665]

Culture collection no.

DSM 42125, CCTCC AA 2013020, JCM 19630, KCTC 29263

[Ref.: #89863]

SI-ID 397466

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Streptomyces sp. Strain ventii, Isolated from a Microbial Mat near Hydrothermal Vents within the Axial Seamount in the Pacific Ocean, and Resequencing of the Type Strains Streptomyces lonarensis NCL 716 and Streptomyces bohaiensis 11A07.	Loughran RM, Mitchell EA, Vining OB, Gallegos DA, Deadmond MC, Wasson BJ, Pfannmuller KM, Paddock BE, Koyack MJ, Oline DK, Ushijima B, Saw JH, McPhail KL, Videau P	Microbiol Resour Announc	10.1128/MRA.00607-20	2020	*
Phylogeny	Streptomyces otsuchiensis sp. nov., a biosurfactant-producing actinobacterium isolated from marine sediment.	Terahara T, Naemura T, Nampo Y, Kobayashi T, Imada C, Hamada M, Tamura T	Int J Syst Evol Microbiol	10.1099/ijsem.0.003638	2019	*
Phylogeny	Streptomyces lonarensis sp. nov., isolated from Lonar Lake, a meteorite salt water lake in India.	Sharma TK, Mawlankar R, Sonalkar VV, Shinde VK, Zhan J, Li WJ, Rele MV, Dastager SG, Kumar LS	Antonie Van Leeuwenhoek	10.1007/s10482-015-0626-9	2015	*
Phylogeny	Streptomyces bohaiensis sp. nov., a novel actinomycete isolated from Scomberomorus niphonius in the Bohai Sea.	Pan HQ, Cheng J, Zhang DF, Yu SY, Khieu TN, Son CK, Jiang Z, Hu JC, Li WJ	J Antibiot (Tokyo)	10.1038/ja.2014.137	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22665

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42125

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89863

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397466.1 )

* These data were automatically processed and therefore are not curated

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