Strain identifier

BacDive ID: 131438

Type strain: Yes

Species: Streptomyces bohaiensis

Strain Designation: 11A07

Strain history: <- Wenjun Li,China

NCBI tax ID(s): 1431344 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22665

BacDive-ID: 131438

DSM-Number: 42125

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Streptomyces bohaiensis 11A07 is an aerobe, spore-forming, mesophilic bacterium that was isolated from young Scomberomorus niphonius .

NCBI tax id

  • NCBI tax id: 1431344
  • Matching level: species

strain history

@refhistory
22665<- W.-J. Li, YIM; 11A07 <- H.-Q. Pan
67770W.-J. Li 11A07.
67771<- Wenjun Li,China

doi: 10.13145/bacdive131438.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces bohaiensis
  • full scientific name: Streptomyces bohaiensis Pan et al. 2015

@ref: 22665

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces bohaiensis

full scientific name: Streptomyces bohaiensis Pan et al. 2015

strain designation: 11A07

type strain: yes

Morphology

cell morphology

@refgram stainmotilityconfidence
67771positive
69480no93.292
69480positive100

multimedia

  • @ref: 22665
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42125.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22665GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
22665STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
22665BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
22665positivegrowth28mesophilic
67770positivegrowth28mesophilic
67771positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481yes100
69480yes98.222

observation

@refobservation
67770quinones: MK-9(H4), MK-9(H6), MK-9(H2)
67771quinones: MK-9(H2), MK-9(H4), MK-9(H6)

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentlatitudelongitude
22665young Scomberomorus niphonius (pelagic fish)Scomberomorus niphoniuseastern Liaoning Peninsula, Bohai Sea (39°20' N, 122°17' E)ChinaCHNAsia39.3333122.283
67770Young fish (Scomberomorus niphonius) from the Bohai SeaScomberomorus niphoniusChinaCHNAsia
67771From young marine fish, `Scomberomorus niphonius` (pelagic fish)ChinaCHNAsia39.3333122.283

isolation source categories

  • Cat1: #Host
  • Cat2: #Fishes

Safety information

risk assessment

  • @ref: 22665
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22665
  • description: Streptomyces bohaiensis strain 11A07 16S ribosomal RNA gene, partial sequence
  • accession: KF682221
  • length: 1520
  • database: ena
  • NCBI tax ID: 1431344

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces bohaiensis 11A07GCA_012033785scaffoldncbi1431344
66792Streptomyces bohaiensis strain 11A071431344.3wgspatric1431344

GC content

@refGC-contentmethod
2266571.4high performance liquid chromatography (HPLC)
6777171.4

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno90.883no
flagellatedno96.596no
gram-positiveyes90.512yes
anaerobicno98.832yes
aerobicyes89.903no
halophileno73.326no
spore-formingyes88.95no
glucose-utilyes88.103no
thermophileno88.978yes
glucose-fermentno87.32no

External links

@ref: 22665

culture collection no.: DSM 42125, CCTCC AA 2013020, JCM 19630, KCTC 29263

straininfo link

  • @ref: 89863
  • straininfo: 397466

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25269462Streptomyces bohaiensis sp. nov., a novel actinomycete isolated from Scomberomorus niphonius in the Bohai Sea.Pan HQ, Cheng J, Zhang DF, Yu SY, Khieu TN, Son CK, Jiang Z, Hu JC, Li WJJ Antibiot (Tokyo)10.1038/ja.2014.1372014Animals, Base Composition/genetics, Carbohydrates/chemistry, Fatty Acids/chemistry, Lipids/chemistry, Multilocus Sequence Typing, Oceans and Seas, Perciformes/*microbiology, Phylogeny, RNA, Ribosomal, 16S/*genetics, Sequence Analysis, RNA/methods, Streptomyces/*classification/genetics/isolation & purificationTranscriptome
Phylogeny26597560Streptomyces lonarensis sp. nov., isolated from Lonar Lake, a meteorite salt water lake in India.Sharma TK, Mawlankar R, Sonalkar VV, Shinde VK, Zhan J, Li WJ, Rele MV, Dastager SG, Kumar LSAntonie Van Leeuwenhoek10.1007/s10482-015-0626-92015Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, India, Lakes/*analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/analysis/metabolism, *Soil Microbiology, Streptomyces/classification/genetics/*isolation & purification/metabolismMetabolism
Phylogeny31693473Streptomyces otsuchiensis sp. nov., a biosurfactant-producing actinobacterium isolated from marine sediment.Terahara T, Naemura T, Nampo Y, Kobayashi T, Imada C, Hamada M, Tamura TInt J Syst Evol Microbiol10.1099/ijsem.0.0036382019Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Japan, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Streptomyces/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Genetics32763929Draft Genome Sequence of Streptomyces sp. Strain ventii, Isolated from a Microbial Mat near Hydrothermal Vents within the Axial Seamount in the Pacific Ocean, and Resequencing of the Type Strains Streptomyces lonarensis NCL 716 and Streptomyces bohaiensis 11A07.Loughran RM, Mitchell EA, Vining OB, Gallegos DA, Deadmond MC, Wasson BJ, Pfannmuller KM, Paddock BE, Koyack MJ, Oline DK, Ushijima B, Saw JH, McPhail KL, Videau PMicrobiol Resour Announc10.1128/MRA.00607-202020Phylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22665Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-42125Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42125)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
89863Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397466.1