Strain identifier
BacDive ID: 131438
Type strain: 
Species: Streptomyces bohaiensis
Strain Designation: 11A07
Strain history: <- Wenjun Li,China
NCBI tax ID(s): 1431344 (species)
version 9.1 (current version)
General
@ref: 22665
BacDive-ID: 131438
DSM-Number: 42125
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive
description: Streptomyces bohaiensis 11A07 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from young Scomberomorus niphonius .
NCBI tax id
- NCBI tax id: 1431344
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22665 | <- W.-J. Li, YIM; 11A07 <- H.-Q. Pan |
| 67770 | W.-J. Li 11A07. |
| 67771 | <- Wenjun Li,China |
doi: 10.13145/bacdive131438.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces bohaiensis
- full scientific name: Streptomyces bohaiensis Pan et al. 2015
@ref: 22665
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces bohaiensis
full scientific name: Streptomyces bohaiensis Pan et al. 2015
strain designation: 11A07
type strain: yes
Morphology
cell morphology
| @ref | gram stain | motility | confidence |
|---|---|---|---|
| 67771 | positive | ||
| 69480 | no | 90 | |
| 69480 | positive | 92.25 |
multimedia
- @ref: 22665
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42125.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 22665 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 22665 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
| 22665 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 22665 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
| 67771 | positive | growth | 28 |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
- @ref: 69481
- spore formation: yes
- confidence: 100
observation
| @ref | observation |
|---|---|
| 67770 | quinones: MK-9(H4), MK-9(H6), MK-9(H2) |
| 67771 | quinones: MK-9(H2), MK-9(H4), MK-9(H6) |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|---|
| 22665 | young Scomberomorus niphonius (pelagic fish) | Scomberomorus niphonius | eastern Liaoning Peninsula, Bohai Sea (39°20' N, 122°17' E) | China | CHN | Asia | 39.3333 | 122.283 |
| 67770 | Young fish (Scomberomorus niphonius) from the Bohai Sea | Scomberomorus niphonius | China | CHN | Asia | |||
| 67771 | From young marine fish, `Scomberomorus niphonius` (pelagic fish) | China | CHN | Asia | 39.3333 | 122.283 |
isolation source categories
- Cat1: #Host
- Cat2: #Fishes
Safety information
risk assessment
- @ref: 22665
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22665
- description: Streptomyces bohaiensis strain 11A07 16S ribosomal RNA gene, partial sequence
- accession: KF682221
- length: 1520
- database: nuccore
- NCBI tax ID: 1431344
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces bohaiensis 11A07 | GCA_012033785 | scaffold | ncbi | 1431344 |
| 66792 | Streptomyces bohaiensis strain 11A07 | 1431344.3 | wgs | patric | 1431344 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 22665 | 71.4 | high performance liquid chromatography (HPLC) |
| 67771 | 71.4 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 92.25 | yes |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 98.027 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 88.774 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 85.081 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 92.636 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 90 | no |
External links
@ref: 22665
culture collection no.: DSM 42125, CCTCC AA 2013020, JCM 19630, KCTC 29263
straininfo link
- @ref: 89863
- straininfo: 397466
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25269462 | Streptomyces bohaiensis sp. nov., a novel actinomycete isolated from Scomberomorus niphonius in the Bohai Sea. | Pan HQ, Cheng J, Zhang DF, Yu SY, Khieu TN, Son CK, Jiang Z, Hu JC, Li WJ | J Antibiot (Tokyo) | 10.1038/ja.2014.137 | 2014 | Animals, Base Composition/genetics, Carbohydrates/chemistry, Fatty Acids/chemistry, Lipids/chemistry, Multilocus Sequence Typing, Oceans and Seas, Perciformes/*microbiology, Phylogeny, RNA, Ribosomal, 16S/*genetics, Sequence Analysis, RNA/methods, Streptomyces/*classification/genetics/isolation & purification | Transcriptome |
| Phylogeny | 26597560 | Streptomyces lonarensis sp. nov., isolated from Lonar Lake, a meteorite salt water lake in India. | Sharma TK, Mawlankar R, Sonalkar VV, Shinde VK, Zhan J, Li WJ, Rele MV, Dastager SG, Kumar LS | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0626-9 | 2015 | Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, India, Lakes/*analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/analysis/metabolism, *Soil Microbiology, Streptomyces/classification/genetics/*isolation & purification/metabolism | Metabolism |
| Phylogeny | 31693473 | Streptomyces otsuchiensis sp. nov., a biosurfactant-producing actinobacterium isolated from marine sediment. | Terahara T, Naemura T, Nampo Y, Kobayashi T, Imada C, Hamada M, Tamura T | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003638 | 2019 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Japan, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Streptomyces/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Genetics | 32763929 | Draft Genome Sequence of Streptomyces sp. Strain ventii, Isolated from a Microbial Mat near Hydrothermal Vents within the Axial Seamount in the Pacific Ocean, and Resequencing of the Type Strains Streptomyces lonarensis NCL 716 and Streptomyces bohaiensis 11A07. | Loughran RM, Mitchell EA, Vining OB, Gallegos DA, Deadmond MC, Wasson BJ, Pfannmuller KM, Paddock BE, Koyack MJ, Oline DK, Ushijima B, Saw JH, McPhail KL, Videau P | Microbiol Resour Announc | 10.1128/MRA.00607-20 | 2020 | Phylogeny |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22665 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42125 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42125) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 89863 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397466.1 |