Pseudomonas mohnii (DSM 18327, IPA-2, CIP 109614)

Name: Pseudomonas mohnii (DSM 18327, IPA-2, CIP 109614)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13138

Type strain

Strain Designation IPA-2

Culture col. no. DSM 18327 IPA-2 CIP 109614 CCUG 53115

NCBI tax ID(s) 395600

Special Collections DSMZ Literature strains CCUG CIP

History DSMZ <- D. Pieper, GBF Braunschweig; IPA-2 <- A. E. J. Wilson, Univ. Vancouver CIP <- 2007, CCUG <- 2006, B. Camara, D.H. Pieper, HZI, Braunschweig, Germany: strain IpA-2

Links

Pseudomonas mohnii IPA-2 is an obligate aerobe, Gram-negative bacterium that was isolated from sequencing batch reactor treating paper mill effluent, enrichment with isopimaric acid.

Gram-negative obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 303228

CCUG 53115,DSM 18327,CIP 109614

@ref 20215

Last LPSN update 2026-05-29 08:27:58

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas mohnii

Full scientific name Pseudomonas mohnii Cámara et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
31953	negative
120999	negative	rod-shaped
125438			90.972
125438	negative		98.5
125439	negative		96.959

Pigmentation

31953

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7506	REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)	Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b) Composition: Trypticase soy broth 30.0 g/l Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l K2HPO4 2.5 g/l D(+)-Glucose 2.5 g/l Distilled water
37788	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120999	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7506	positive	growth	30
37788	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
120999	obligate aerobe
125438	aerobe	94.957
125439	obligate aerobe	98.457

Spore formation

@ref	Spore formation	Confidence
31953
125439		98.855

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31953	NaCl	positive	growth	<5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31953	18240 ChEBI	4-hydroxy-L-proline	+	carbon source
31953	16449 ChEBI	alanine	+	carbon source
31953	22599 ChEBI	arabinose	+	carbon source
31953	22653 ChEBI	asparagine	+	carbon source
31953	35391 ChEBI	aspartate	+	carbon source
31953	17126 ChEBI	DL-carnitine	+	carbon source
31953	15740 ChEBI	formate	+	carbon source
31953	28260 ChEBI	galactose	+	carbon source
31953	16865 ChEBI	gamma-aminobutyric acid	+	carbon source
31953	24265 ChEBI	gluconate	+	carbon source
31953	17234 ChEBI	glucose	+	carbon source
31953	29987 ChEBI	glutamate	+	carbon source
31953	17754 ChEBI	glycerol	+	carbon source
31953	24996 ChEBI	lactate	+	carbon source
31953	15792 ChEBI	malonate	+	carbon source
31953	29864 ChEBI	mannitol	+	carbon source
31953	37684 ChEBI	mannose	+	carbon source
31953	51850 ChEBI	methyl pyruvate	+	carbon source
120999	17632 ChEBI	nitrate	-	reduction
120999	16301 ChEBI	nitrite	-	reduction
31953	50048 ChEBI	phenylethylamine	+	carbon source
31953	26271 ChEBI	proline	+	carbon source
31953	17272 ChEBI	propionate	+	carbon source
31953	17148 ChEBI	putrescine	+	carbon source
31953	26490 ChEBI	quinate	+	carbon source
31953	17822 ChEBI	serine	+	carbon source
31953	30031 ChEBI	succinate	+	carbon source
31953	27248 ChEBI	urocanic acid	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120999	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120999	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31953	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120999	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
120999	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120999	-	+	+	-	-	+	+	-	+	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Bioreactor	-
#Engineered	#Industrial	#Industrial production
#Engineered	#Waste	#Wastewater

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
7506	sequencing batch reactor treating paper mill effluent, enrichment with isopimaric acid	Canada	CAN	North America
120999	Sequencing batch bioreactor, stationary enrichment	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence X96788 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	124
Soil Samples	197
Animal Samples	162
Plant Samples	153
Total Samples	636

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7506	1	Risk group (German classification) According to TRBA 466
120999	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2667527224 annotated assembly for Pseudomonas mohnii DSM 18327	contig	GCA_900105115	395600.4	2667527224	395600	76.74

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31953	Pseudomonas mohnii partial 16S rRNA gene, type strain IpA-2T	AM293567	1459		395600
7506	Pseudomonas sp. 16S rRNA gene, strain IpA-2	X96788	1492		306

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2667527224 annotated assembly for Pseudomonas mohnii DSM 18327
BV-BRC: 395600.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.46	no
125439	motility	BacteriaNetⓘ	yes	80.24	no
125439	gram_stain	BacteriaNetⓘ	negative	96.96	no
125439	spore_formation	BacteriaNetⓘ	no	98.86	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas mohnii strain DSM 18327
PATRIC: 395600.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	98.36	no
125438	spore-forming	spore-formingⓘ	no	84.94	no
125438	aerobic	aerobicⓘ	yes	94.96	yes
125438	thermophilic	thermophileⓘ	no	98.99	yes
125438	flagellated	motile2+ⓘ	yes	90.97	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Isolation, characterization, and genetic manipulation of cold-tolerant, manganese-oxidizing Pseudomonas sp. strains.	Jones I, Vermillion D, Tracy C, Denton R, Davis R, Geszvain K.	Appl Environ Microbiol	10.1128/aem.00510-24	2024
	Isolation and Characterization of Pseudomonas spp. Strains That Efficiently Decompose Sodium Dodecyl Sulfate.	Furmanczyk EM, Kaminski MA, Spolnik G, Sojka M, Danikiewicz W, Dziembowski A, Lipinski L, Sobczak A.	Front Microbiol	10.3389/fmicb.2017.01872	2017
Phylogeny	Pseudomonas reinekei sp. nov., Pseudomonas moorei sp. nov. and Pseudomonas mohnii sp. nov., novel species capable of degrading chlorosalicylates or isopimaric acid.	Camara B, Strompl C, Verbarg S, Sproer C, Pieper DH, Tindall BJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64703-0	2007

References

#7506	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18327
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28209	IJSEM 923 2007 ( DOI 10.1099/ijs.0.64703-0 , PubMed 17473234 )
#31953	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28209
#37788	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120999	Collection of Institut Pasteur ; Curators of the CIP; CIP 109614
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas mohnii (DSM 18327, IPA-2, CIP 109614)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900105115

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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