Name: Sporolactobacillus spathodeae BK117-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131327

Type strain:

Species: Sporolactobacillus spathodeae

Strain Designation: BK117-1

Culture col. no.: DSM 100968, JCM 19542, LMG 28366, PCU 337, TISTR 2235, CIP 110954

Strain history: CIP <- 2015, S. Tanasupawat, Chulalongkorn Univ., Bangkok, Thailand: strain BK117-1

NCBI tax ID(s): 1465502 (species)

SI-ID 394354

LMG 28366, JCM 19542

Section

Sporolactobacillus spathodeae BK117-1 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from tree bark, African Tulip, Spathodea campanulata P. Beauv..

motile
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Sporolactobacillaceae*
	Genus	*Sporolactobacillus*
	Species	**Sporolactobacillus spathodeae**
	Full Scientific Name (LPSN)	Sporolactobacillus spathodeae Thamacharoensuk et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #122691]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #122691]	Cell shape	rod-shaped

[Ref.: #122691]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %93.57

[Ref.: #22554]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22554]

Culture medium

GYP GLUCOSE-YEAST-PEPTONE MEDIUM (DSMZ Medium 852)

[Ref.: #22554]

Culture medium growth

[Ref.: #22554]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22554]

Culture medium composition

expand / minimize

[Ref.: #22554]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22554]

Culture medium growth

[Ref.: #22554]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22554]

Culture medium composition

expand / minimize

[Ref.: #122691]

Culture medium

CIP Medium 40

[Ref.: #122691]

Culture medium growth

[Ref.: #122691]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #22554]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #22554]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22554]	Oxygen tolerance	anaerobe
[Ref.: #22554]	Oxygen tolerance	microaerophile

[Ref.: #69480]

Ability of spore formation

yes Confidence in %99.524

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22554]	Sample type/isolated from	tree bark, African Tulip, Spathodea campanulata P. Beauv.
[Ref.: #22554]	Host species	Spathodea campanulata
[Ref.: #22554]	Geographic location (country and/or sea, region)	Bangkok
[Ref.: #22554]	Country	Thailand
[Ref.: #22554]	Country ISO 3 Code	THA
[Ref.: #22554]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	African Tulip (Spathodea campanulata P. Beauv.) tree barks
[Ref.: #67770]	Host species	Spathodea campanulata
[Ref.: #67770]	Geographic location (country and/or sea, region)	Bangkok
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia

[Ref.: #122691]	Sample type/isolated from	Plant, African tulip tree bark, Spathodea campanulata P. Beauv.
[Ref.: #122691]	Geographic location (country and/or sea, region)	Bangkok
[Ref.: #122691]	Country	Thailand
[Ref.: #122691]	Country ISO 3 Code	THA
[Ref.: #122691]	Continent	Asia
[Ref.: #122691]	Isolation date	2013-05-23
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB911246 (>99% sequence identity) for Sporolactobacillus spathodeae from Microbeatlas

Aquatic Samples	14
Soil Samples	35
Animal Samples	25
Plant Samples	7
Total Samples	81

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22554]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122691]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22554]	Sporolactobacillus spathodeae gene for 16S ribosomal RNA, partial sequence	AB911246	1351	ENA	1465502 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sporolactobacillus spathodeae DSM 100968	GCA_016908935	contig	GenBank	1465502 tax ID	*
[Ref.: #66792]	Sporolactobacillus spathodeae strain DSM 100968	1465502.3	wgs	PATRIC	1465502 tax ID	*
[Ref.: #66792]	Sporolactobacillus spathodeae DSM 100968	2901233323	draft	JGI IMG/M	1465502 tax ID	*

[Ref.: #22554]	GC-content	47.4 mol%
[Ref.: #67770]	GC-content	47.4 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sporolactobacillus spathodeae strain DSM 100968 PATRIC: 1465502.3
[Ref.: #69481]	spore-forming	yes	61	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sporolactobacillus spathodeae strain DSM 100968 PATRIC: 1465502.3
[Ref.: #69480]	motile	yes	86.772	no
[Ref.: #69480]	gram-positive	yes	89.658	no
[Ref.: #69480]	anaerobic	no	93.984	no
[Ref.: #69480]	aerobic	no	89.824	yes
[Ref.: #69480]	halophile	no	68.759	no
[Ref.: #69480]	spore-forming	yes	92.571	no
[Ref.: #69480]	thermophile	no	94.482	yes
[Ref.: #69480]	glucose-util	yes	89.534	no
[Ref.: #69480]	flagellated	yes	69.484	no
[Ref.: #69480]	glucose-ferment	no	63.854	no

Availability in culture collections External links

[Ref.: #22554]

Culture collection no.

DSM 100968, JCM 19542, LMG 28366, PCU 337, TISTR 2235, CIP 110954

[Ref.: #89768]

SI-ID 394354

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sporolactobacillus shoreae sp. nov. and Sporolactobacillus spathodeae sp. nov., two spore-forming lactic acid bacteria isolated from tree barks in Thailand.	Thamacharoensuk T, Kitahara M, Ohkuma M, Thongchul N, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijs.0.000084	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22554

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100968

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89768

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID394354.1 )

#122691 Collection of Institut Pasteur ; Curators of the CIP; CIP 110954
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Sporolactobacillus spathodeae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Sporolactobacillus spathodeae strain DSM 100968

Sporolactobacillus spathodeae strain DSM 100968

Change proposal

Change proposal