Name: Sporolactobacillus spathodeae BK117-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131327

Type strain:

Species: Sporolactobacillus spathodeae

Strain Designation: BK117-1

Culture col. no.: DSM 100968, JCM 19542, LMG 28366, PCU 337, TISTR 2235, CIP 110954

Strain history: CIP <- 2015, S. Tanasupawat, Chulalongkorn Univ., Bangkok, Thailand: strain BK117-1

NCBI tax ID(s): 1465502 (species)

SI-ID 394354

LMG 28366, JCM 19542

Special Collections

Section

Sporolactobacillus spathodeae BK117-1 is an anaerobe, spore-forming, Gram-positive bacterium that was isolated from tree bark, African Tulip, Spathodea campanulata P. Beauv..

Gram-positive
rod-shaped
spore-forming
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Sporolactobacillaceae*
	Genus	*Sporolactobacillus*
	Species	**Sporolactobacillus spathodeae**
	Full Scientific Name (LPSN)	Sporolactobacillus spathodeae Thamacharoensuk et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #122691]	Gram stain	positive

[Ref.: #122691]	Cell shape	rod-shaped

[Ref.: #122691]	Motility	no

[Ref.: #22554]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22554]

Culture medium

GYP GLUCOSE-YEAST-PEPTONE MEDIUM (DSMZ Medium 852)

[Ref.: #22554]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #22554]

Culture medium composition

expand / minimize

[Ref.: #22554]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22554]

Culture medium growth

[Ref.: #22554]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22554]

Culture medium composition

expand / minimize

[Ref.: #122691]

Culture medium

CIP Medium 40

[Ref.: #122691]

Culture medium growth

[Ref.: #122691]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #22554]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22554]	Oxygen tolerance	anaerobe
[Ref.: #22554]	Oxygen tolerance	microaerophile

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22554]	Sample type/isolated from	tree bark, African Tulip, Spathodea campanulata P. Beauv.
[Ref.: #22554]	Host species	Spathodea campanulata
[Ref.: #22554]	Geographic location (country and/or sea, region)	Bangkok
[Ref.: #22554]	Country	Thailand
[Ref.: #22554]	Country ISO 3 Code	THA
[Ref.: #22554]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	African Tulip (Spathodea campanulata P. Beauv.) tree barks
[Ref.: #67770]	Host species	Spathodea campanulata
[Ref.: #67770]	Geographic location (country and/or sea, region)	Bangkok
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia

[Ref.: #122691]	Sample type/isolated from	Plant, African tulip tree bark, Spathodea campanulata P. Beauv.
[Ref.: #122691]	Geographic location (country and/or sea, region)	Bangkok
[Ref.: #122691]	Country	Thailand
[Ref.: #122691]	Country ISO 3 Code	THA
[Ref.: #122691]	Continent	Asia
[Ref.: #122691]	Isolation date	2013-05-23
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB911246 (>99% sequence identity) for Sporolactobacillus spathodeae from Microbeatlas

Aquatic Samples	14
Soil Samples	35
Animal Samples	25
Plant Samples	7
Total Samples	81

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22554]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122691]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22554]	Sporolactobacillus spathodeae gene for 16S ribosomal RNA, partial sequence	AB911246	1351	GenBank ENA	1465502 tax ID
[Ref.: #124043]	Sporolactobacillus spathodeae JCM 19542 gene for 16S rRNA, partial sequence.	LC638723	1479	GenBank ENA	1465502 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sporolactobacillus spathodeae DSM 100968	GCA_016908935	contig	GenBank ENA	1465502 tax ID	*
[Ref.: #66792]	Sporolactobacillus spathodeae strain DSM 100968	1465502.3	wgs	PATRIC	1465502 tax ID	*
[Ref.: #66792]	Sporolactobacillus spathodeae DSM 100968	2901233323	draft	JGI IMG/M	1465502 tax ID	*

[Ref.: #22554]	GC-content	47.4 mol%
[Ref.: #67770]	GC-content	47.4 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sporolactobacillus spathodeae strain DSM 100968 PATRIC: 1465502.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	61	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sporolactobacillus spathodeae strain DSM 100968 PATRIC: 1465502.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	80.103	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	81.82	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	83.292	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	69.715	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.72	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	80.761	no

Availability in culture collections External links

[Ref.: #22554]

Culture collection no.

DSM 100968, JCM 19542, LMG 28366, PCU 337, TISTR 2235, CIP 110954

[Ref.: #89768]

SI-ID 394354

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sporolactobacillus shoreae sp. nov. and Sporolactobacillus spathodeae sp. nov., two spore-forming lactic acid bacteria isolated from tree barks in Thailand.	Thamacharoensuk T, Kitahara M, Ohkuma M, Thongchul N, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijs.0.000084	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22554

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100968

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89768

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID394354.1 )

#122691 Collection of Institut Pasteur ; Curators of the CIP; CIP 110954

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Sporolactobacillus spathodeae strain DSM 100968

Sporolactobacillus spathodeae strain DSM 100968

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