Sporolactobacillus shoreae (DSM 100967, BK92, JCM 19541)

Name: Sporolactobacillus shoreae (DSM 100967, BK92, JCM 19541)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131326

Type strain

Strain Designation BK92

Culture col. no. DSM 100967 BK92 JCM 19541 LMG 28365 PCU 336 1 more

NCBI tax ID(s) 1465501

Special Collections DSMZ JCM

History <- JCM <- S. Tanasupawat, Chulalongkorn Univ., Bangkok, Thailand; BK92 S. Tanasupawat; Chulalongkorn Univ., Thailand; BK92.

Links

Sporolactobacillus shoreae BK92 is an anaerobe bacterium that was isolated from tree bark, White-Meranti Shorea talura Roxb..

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 394352

DSM 100967,LMG 28365,JCM 19541

@ref 20215

Last LPSN update 2026-02-09 11:31:26

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Sporolactobacillaceae

Genus Sporolactobacillus

Species Sporolactobacillus shoreae

Full scientific name Sporolactobacillus shoreae Thamacharoensuk et al. 2015

Morphology

Colony morphology

22553

Incubation period3-7 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22553	GYP GLUCOSE-YEAST-PEPTONE MEDIUM (DSMZ Medium 852)		Medium recipe at MediaDive	Name: GYP GLUCOSE-YEAST-PEPTONE MEDIUM (DSMZ Medium 852) Composition: Glucose 20.0 g/l Yeast extract 10.0 g/l Peptone 10.0 g/l Na-acetate 10.0 g/l Agar 10.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x 4 H2O 0.01 g/l FeSO4 x 7 H2O 0.01 g/l NaCl 0.01 g/l Distilled water
22553	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22553	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
22553	anaerobe
22553	microaerophile

Observation

67770

Observationquinones: MK-7

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	suberin monomers biosynthesis	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	cardiolipin biosynthesis	100	7 of 7
66794	enterobactin biosynthesis	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	acetate fermentation	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	cyanate degradation	100	3 of 3
66794	teichoic acid biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	acetoin degradation	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	ethanol fermentation	100	2 of 2
66794	lipoate biosynthesis	100	5 of 5
66794	aspartate and asparagine metabolism	100	9 of 9
66794	heme metabolism	92.86	13 of 14
66794	starch degradation	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	d-mannose degradation	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	pyrimidine metabolism	84.44	38 of 45
66794	purine metabolism	81.91	77 of 94
66794	pentose phosphate pathway	81.82	9 of 11
66794	3-chlorocatechol degradation	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	photosynthesis	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	sulfopterin metabolism	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glutamate and glutamine metabolism	75	21 of 28
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	phenylalanine metabolism	69.23	9 of 13
66794	methionine metabolism	69.23	18 of 26
66794	leucine metabolism	69.23	9 of 13
66794	non-pathway related	68.42	26 of 38
66794	formaldehyde oxidation	66.67	2 of 3
66794	NAD metabolism	66.67	12 of 18
66794	octane oxidation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	alanine metabolism	65.52	19 of 29
66794	citric acid cycle	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	metabolism of disaccharids	63.64	7 of 11
66794	oxidative phosphorylation	62.64	57 of 91
66794	polyamine pathway	60.87	14 of 23
66794	factor 420 biosynthesis	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	histidine metabolism	58.62	17 of 29
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	tryptophan metabolism	57.89	22 of 38
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	propanol degradation	57.14	4 of 7
66794	cysteine metabolism	55.56	10 of 18
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	lysine metabolism	54.76	23 of 42
66794	arginine metabolism	54.17	13 of 24
66794	phosphatidylethanolamine bioynthesis	53.85	7 of 13
66794	urea cycle	53.85	7 of 13
66794	Entner Doudoroff pathway	50	5 of 10
66794	kanosamine biosynthesis II	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	CMP-KDO biosynthesis	50	2 of 4
66794	butanoate fermentation	50	2 of 4
66794	ketogluconate metabolism	50	4 of 8
66794	glutathione metabolism	50	7 of 14
66794	adipate degradation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	lactate fermentation	50	2 of 4
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	proline metabolism	45.45	5 of 11
66794	arachidonic acid metabolism	44.44	8 of 18
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	tyrosine metabolism	42.86	6 of 14
66794	lipid metabolism	41.94	13 of 31
66794	gallate degradation	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	phenol degradation	40	8 of 20
66794	flavin biosynthesis	40	6 of 15
66794	arachidonate biosynthesis	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	sulfate reduction	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	vitamin B6 metabolism	36.36	4 of 11
66794	degradation of pentoses	35.71	10 of 28
66794	nitrate assimilation	33.33	3 of 9
66794	lipid A biosynthesis	33.33	3 of 9
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	allantoin degradation	33.33	3 of 9
66794	sphingosine metabolism	33.33	2 of 6
66794	ascorbate metabolism	31.82	7 of 22
66794	degradation of sugar alcohols	31.25	5 of 16
66794	propionate fermentation	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	myo-inositol biosynthesis	30	3 of 10
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	vitamin B12 metabolism	26.47	9 of 34
66794	alginate biosynthesis	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	4-hydroxymandelate degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
22553	tree bark, White-Meranti Shorea talura Roxb.	Shorea talura	Rayong province	Thailand	THA	Asia
67770	White-Meranti (Shorea talura Roxb.) tree barks	Shorea talura	Rayong Province	Thailand	THA	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB911245 (>99% sequence identity) for Sporolactobacillus shoreae subclade from Microbeatlas

Aquatic Samples	25
Soil Samples	25
Animal Samples	22
Plant Samples	11
Total Samples	83

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22553	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM468493v1 assembly for Sporolactobacillus shoreae BK92	scaffold	GCA_004684935	1465501.3	2881127945	1465501	53.1

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22553	Sporolactobacillus shoreae gene for 16S ribosomal RNA, partial sequence	AB911245	1372		1465501
124043	Sporolactobacillus shoreae JCM 19541 gene for 16S rRNA, partial sequence.	LC638722	1479		1465501

GC content

@ref	GC-content (mol%)	Method
22553	46.6
67770	46.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sporolactobacillus shoreae BK92
NCBI: GCA_004684935

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	88.40	no
125439	motility	BacteriaNetⓘ	yes	79.90	no
125439	gram_stain	BacteriaNetⓘ	variable	84.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	85.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sporolactobacillus shoreae BK92
NCBI: GCA_004684935.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	80.49	no
125438	anaerobic	anaerobicⓘ	no	81.35	no
125438	aerobic	aerobicⓘ	no	68.86	no
125438	spore-forming	spore-formingⓘ	yes	82.14	no
125438	thermophilic	thermophileⓘ	no	91.99	yes
125438	flagellated	motile2+ⓘ	yes	82.71	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Sporolactobacillus mangiferae sp. nov., a spore-forming lactic acid bacterium isolated from tree bark in Thailand.	Phuengjayaem S, Poothong S, Sitdhipol J, Chaiyawan N, Thitiprasert S, Thongchul N, Tanasupawat S.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005993	2023
Phylogeny	Sporolactobacillus shoreae sp. nov. and Sporolactobacillus spathodeae sp. nov., two spore-forming lactic acid bacteria isolated from tree barks in Thailand.	Thamacharoensuk T, Kitahara M, Ohkuma M, Thongchul N, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijs.0.000084	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22553	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100967
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sporolactobacillus shoreae (DSM 100967, BK92, JCM 19541)

Name and taxonomic classification

Morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004684935

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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