Name: Arthrobacter liuii DSXY973
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131319

Type strain:

Species: Arthrobacter liuii

Strain Designation: DSXY973

Culture col. no.: DSM 100925, CGMCC 1.12778, JCM 19864

Strain history: L. Zhang DSXY973.

NCBI tax ID(s): 1476996 (species)

SI-ID 400377

DSM 100925

Section

Arthrobacter liuii DSXY973 is a mesophilic, Gram-positive bacterium that was isolated from desert soil.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Arthrobacter*
	Species	**Arthrobacter liuii**
	Full Scientific Name (LPSN)	Arthrobacter liuii Yu et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22546]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #22546]

Culture medium growth

[Ref.: #22546]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22546]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22546]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #22546]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.748

[Ref.: #67770]

Observation

quinones: MK-9(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22546]	Sample type/isolated from	desert soil
[Ref.: #22546]	Geographic location (country and/or sea, region)	Xinjiang Uigur region
[Ref.: #22546]	Country	China
[Ref.: #22546]	Country ISO 3 Code	CHN
[Ref.: #22546]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Desert soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil
#Condition	#Xerophilic	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22546]	Arthrobacter liuii strain DSXY973 16S ribosomal RNA gene, partial sequence	KJ082091	1477	ENA	1476996 tax ID
[Ref.: #67770]	Arthrobacter liuii gene for 16S ribosomal RNA, partial sequence, strain: JCM 19864	LC096085	1394	ENA	1476996 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Arthrobacter liuii CGMCC 1.12778	GCA_014639275	contig	GenBank	1476996 tax ID	*
[Ref.: #66792]	Arthrobacter liuii strain CGMCC 1.12778	1476996.4	wgs	PATRIC	1476996 tax ID	*

[Ref.: #22546]	GC-content	67.6 mol%
[Ref.: #67770]	GC-content	67.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Arthrobacter liuii strain CGMCC 1.12778 PATRIC: 1476996.4
[Ref.: #69481]	spore-forming	no	87	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Arthrobacter liuii strain CGMCC 1.12778 PATRIC: 1476996.4
[Ref.: #69480]	motile	no	91.631	no
[Ref.: #69480]	gram-positive	yes	92.562	no
[Ref.: #69480]	anaerobic	no	99.528	no
[Ref.: #69480]	aerobic	yes	95.076	no
[Ref.: #69480]	halophile	no	91.284	no
[Ref.: #69480]	spore-forming	no	88.601	no
[Ref.: #69480]	thermophile	no	99.167	yes
[Ref.: #69480]	glucose-util	yes	86.865	no
[Ref.: #69480]	flagellated	no	97.448	no
[Ref.: #69480]	glucose-ferment	no	86.852	no

Availability in culture collections External links

[Ref.: #22546]

Culture collection no.

DSM 100925, CGMCC 1.12778, JCM 19864

[Ref.: #89760]

SI-ID 400377

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arthrobacter sedimenti sp. nov., isolated from river sediment in Yuantouzhu park, China.	Lin P, Yan ZF, Li CT	Arch Microbiol	10.1007/s00203-020-01968-y	2020	*
Phylogeny	Arthrobacter pokkalii sp nov, a Novel Plant Associated Actinobacterium with Plant Beneficial Properties, Isolated from Saline Tolerant Pokkali Rice, Kerala, India.	Krishnan R, Menon RR, Tanaka N, Busse HJ, Krishnamurthi S, Rameshkumar N	PLoS One	10.1371/journal.pone.0150322	2016	*
Phylogeny	Arthrobacter liuii sp. nov., resuscitated from Xinjiang desert soil.	Yu XY, Zhang L, Ren B, Yang N, Liu M, Liu XT, Zhang LX, Ding LX	Int J Syst Evol Microbiol	10.1099/ijs.0.000037	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22546

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100925

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89760

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400377.1 )

* These data were automatically processed and therefore are not curated

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Arthrobacter liuii strain CGMCC 1.12778

Arthrobacter liuii strain CGMCC 1.12778

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