Strain identifier
BacDive ID: 131319
Type strain: 
Species: Arthrobacter liuii
Strain Designation: DSXY973
Strain history: L. Zhang DSXY973.
NCBI tax ID(s): 1476996 (species)
version 8.1 (current version)
General
@ref: 22546
BacDive-ID: 131319
DSM-Number: 100925
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Arthrobacter liuii DSXY973 is a mesophilic, Gram-positive bacterium that was isolated from desert soil.
NCBI tax id
- NCBI tax id: 1476996
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22546 | <- JCM; JCM 19864 <-L. Zhang, CAS, Beijing, PR China; DSXY973 |
| 67770 | L. Zhang DSXY973. |
doi: 10.13145/bacdive131319.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Arthrobacter
- species: Arthrobacter liuii
- full scientific name: Arthrobacter liuii Yu et al. 2015
@ref: 22546
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter liuii
full scientific name: Arthrobacter liuii Yu et al. 2015
strain designation: DSXY973
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 22546
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 22546 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.748
observation
- @ref: 67770
- observation: quinones: MK-9(H2)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 22546 | desert soil | Xinjiang Uigur region | China | CHN | Asia |
| 67770 | Desert soil | Xinjiang | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Desert |
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Xerophilic |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 22546 | Arthrobacter liuii strain DSXY973 16S ribosomal RNA gene, partial sequence | KJ082091 | 1477 | ena | 1476996 |
| 67770 | Arthrobacter liuii gene for 16S ribosomal RNA, partial sequence, strain: JCM 19864 | LC096085 | 1394 | ena | 1476996 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Arthrobacter liuii CGMCC 1.12778 | GCA_014639275 | contig | ncbi | 1476996 |
| 66792 | Arthrobacter liuii strain CGMCC 1.12778 | 1476996.4 | wgs | patric | 1476996 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 22546 | 67.6 | |
| 67770 | 67.6 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 87 | no |
| motile | no | 91.631 | no |
| gram-positive | yes | 92.562 | no |
| anaerobic | no | 99.528 | no |
| aerobic | yes | 95.076 | no |
| halophile | no | 91.284 | no |
| spore-forming | no | 88.601 | no |
| thermophile | no | 99.167 | yes |
| glucose-util | yes | 86.865 | no |
| flagellated | no | 97.448 | no |
| glucose-ferment | no | 86.852 | no |
External links
@ref: 22546
culture collection no.: DSM 100925, CGMCC 1.12778, JCM 19864
straininfo link
- @ref: 89760
- straininfo: 400377
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25525122 | Arthrobacter liuii sp. nov., resuscitated from Xinjiang desert soil. | Yu XY, Zhang L, Ren B, Yang N, Liu M, Liu XT, Zhang LX, Ding LX | Int J Syst Evol Microbiol | 10.1099/ijs.0.000037 | 2014 | Arthrobacter/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, *Desert Climate, Fatty Acids/chemistry, Lysine/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Genetics |
| Phylogeny | 26963092 | Arthrobacter pokkalii sp nov, a Novel Plant Associated Actinobacterium with Plant Beneficial Properties, Isolated from Saline Tolerant Pokkali Rice, Kerala, India. | Krishnan R, Menon RR, Tanaka N, Busse HJ, Krishnamurthi S, Rameshkumar N | PLoS One | 10.1371/journal.pone.0150322 | 2016 | *Arthrobacter/classification/genetics/isolation & purification, India, Oryza/*microbiology, RNA, Bacterial/*genetics, RNA, Ribosomal, 16S/*genetics, *Rhizosphere, *Soil Microbiology | Enzymology |
| Phylogeny | 32661667 | Arthrobacter sedimenti sp. nov., isolated from river sediment in Yuantouzhu park, China. | Lin P, Yan ZF, Li CT | Arch Microbiol | 10.1007/s00203-020-01968-y | 2020 | Arthrobacter/chemistry/*classification/genetics/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, RNA, Ribosomal, 16S/genetics, Rivers/microbiology, *Soil Microbiology, Species Specificity | Enzymology |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22546 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100925 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100925) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 89760 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400377.1 |