Caballeronia megalochromosomata (DSM 100850, JCM 19905, KACC 17925)

Name: Caballeronia megalochromosomata (DSM 100850, JCM 19905, KACC 17925)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131318

Type strain

Strain Designation JC2949

Culture col. no. DSM 100850 JCM 19905 KACC 17925 JC2949

NCBI tax ID(s) 1399969

Special Collections DSMZ JCM

History DSMZ <- JCM <- J. Chun, Seoul Natl. Univ., Republic of Korea; JC2949 JCM <-- J. Chun JC2949.

Links

Caballeronia megalochromosomata JC2949 is a bacterium that was isolated from grassland soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 396496

LMG 29263,JCM 19905,KACC 17925,DSM 100850

@ref 20215

Last LPSN update 2026-05-29 08:37:35

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Caballeronia

Species Caballeronia megalochromosomata

Full scientific name Caballeronia megalochromosomata (Baek et al. 2015) Dobritsa and Samadpour 2016

Synonyms (1)

Burkholderia megalochromosomata

Morphology

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Incubation period
22545	gamma	0	1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22545	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22545	positive	growth	30
67770	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.067

Spore formation

@ref	Spore formation	Confidence
125439		95.371

Enzymes

@ref	Value	Activity	Ec
22545	catalase	+	1.11.1.6
22545	cytochrome-c oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Grassland
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22545	grassland soil	Gwanak Mountain, Seoul	Republic of Korea	KOR	Asia
67770	Glassland soil in Gwanak Mountain	Seoul	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KF155693 (>99% sequence identity) for Burkholderia from Microbeatlas

Aquatic Samples	43
Soil Samples	383
Animal Samples	53
Plant Samples	56
Total Samples	535

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22545	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score	IMG accession
66792	Caballeronia megalochromosomata JC2949	complete			1399969	38.98	2593339170
67770	ASM158056v1 assembly for Caballeronia megalochromosomata JC2949	contig	GCA_001580565	1399969.4	1399969	0

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22545	Caballeronia megalochromosomata strain JC2949 16S ribosomal RNA gene, partial sequence	KF155693	1464		1399969

GC content

22545

GC-content (mol%)62.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM158056v1 assembly for Caballeronia megalochromosomata JC2949
NCBI: GCA_001580565

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.07	no
125439	gram_stain	BacteriaNetⓘ	negative	81.13	no
125439	motility	BacteriaNetⓘ	yes	49.10	no
125439	spore_formation	BacteriaNetⓘ	no	95.37	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Burkholderia megalochromosomata sp. nov., isolated from grassland soil.	Baek I, Seo B, Lee I, Lee K, Park SC, Yi H, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.000046	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22545	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100850
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Caballeronia megalochromosomata (DSM 100850, JCM 19905, KACC 17925)

Name and taxonomic classification

Morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001580565

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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