Name: Caballeronia megalochromosomata JC2949
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131318

Type strain:

Species: Caballeronia megalochromosomata

Strain Designation: JC2949

Culture col. no.: DSM 100850, JCM 19905, KACC 17925

Strain history: J. Chun JC2949.

NCBI tax ID(s): 1399969 (species)

SI-ID 396496

LMG 29263, JCM 19905, KACC 17925, DSM 100850

Section

Caballeronia megalochromosomata JC2949 is a mesophilic bacterium that was isolated from grassland soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Caballeronia*
	Species	**Caballeronia megalochromosomata**
	Full Scientific Name (LPSN)	Caballeronia megalochromosomata (Baek et al. 2015) Dobritsa and Samadpour 2016

Synonym

Burkholderia megalochromosomata

Information on morphological and physiological properties Morphology

[Ref.: #22545]	Type of hemolysis	gamma
[Ref.: #22545]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22545]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #22545]

Culture medium growth

[Ref.: #22545]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22545]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22545]			growth	30 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #22545]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #22545]		catalase	+	1.11.1.6
[Ref.: #22545]		cytochrome-c oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22545]	Sample type/isolated from	grassland soil
[Ref.: #22545]	Geographic location (country and/or sea, region)	Gwanak Mountain, Seoul
[Ref.: #22545]	Country	Republic of Korea
[Ref.: #22545]	Country ISO 3 Code	KOR
[Ref.: #22545]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Glassland soil in Gwanak Mountain
[Ref.: #67770]	Geographic location (country and/or sea, region)	Seoul
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Grassland
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF155693 (>99% sequence identity) for Burkholderia from Microbeatlas

Aquatic Samples	43
Soil Samples	383
Animal Samples	53
Plant Samples	56
Total Samples	535

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22545]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22545]	Burkholderia megalochromosomata strain JC2949 16S ribosomal RNA gene, partial sequence	KF155693	1464	ENA	1399969 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Caballeronia megalochromosomata JC2949	GCA_001580565	contig	GenBank	1399969 tax ID
[Ref.: #66792]	Caballeronia megalochromosomata JC2949	2593339170	draft	JGI IMG/M	1399969 tax ID	*

[Ref.: #22545]

GC-content

62.7 mol%

Availability in culture collections External links

[Ref.: #22545]

Culture collection no.

DSM 100850, JCM 19905, KACC 17925

[Ref.: #89759]

SI-ID 396496

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Burkholderia megalochromosomata sp. nov., isolated from grassland soil.	Baek I, Seo B, Lee I, Lee K, Park SC, Yi H, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.000046	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22545

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100850

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89759

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396496.1 )

* These data were automatically processed and therefore are not curated

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