Name: Rhizorhabdus argentea SP1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131278

Type strain:

Species: Rhizorhabdus argentea

Strain Designation: SP1

Culture col. no.: DSM 100912, ATCC 51289, LMG 12581

Strain history: <- LMG <- K. N. Jochimsen, Dep. Plant Pathology, University of California; SP1

NCBI tax ID(s): 1387174 (species)

SI-ID 42904

ATCC 51289, LMG 12581, DSM 100912

Section

Rhizorhabdus argentea SP1 is a mesophilic plant pathogen that was isolated from soil.

mesophilic
plant pathogen
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Rhizorhabdus*
	Species	**Rhizorhabdus argentea**
	Full Scientific Name (LPSN)	Rhizorhabdus argentea Francis et al. 2014

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22505]

Culture medium

MEDIUM S FOR RHIZORHABDUS (DSMZ Medium 1594)

[Ref.: #22505]

Culture medium growth

[Ref.: #22505]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22505]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22505]			growth	28 °C

[Ref.: #22505]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22505]	Sample type/isolated from	soil
[Ref.: #22505]	Geographic location (country and/or sea, region)	Montes de Toledo
[Ref.: #22505]	Country	Spain
[Ref.: #22505]	Country ISO 3 Code	ESP
[Ref.: #22505]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF437572 (>99% sequence identity) for Rhizorhabdus from Microbeatlas

Aquatic Samples	130
Soil Samples	80
Animal Samples	30
Plant Samples	31
Total Samples	271

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22505]	Pathogenicity (plant)	yes
[Ref.: #22505]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22505]	Rhizorhabdus argentea strain SP1 16S ribosomal RNA gene, partial sequence	KF437572	1453	ENA	1387174 tax ID

Availability in culture collections External links

[Ref.: #22505]

Culture collection no.

DSM 100912, ATCC 51289, LMG 12581

[Ref.: #89722]

SI-ID 42904

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of rhizosphere bacteria including strains causing corky root of lettuce and proposal of Rhizorhapis suberifaciens gen. nov., comb. nov., Sphingobium mellinum sp. nov., Sphingobium xanthum sp. nov. and Rhizorhabdus argentea gen. nov., sp. nov.	Francis IM, Jochimsen KN, De Vos P, van Bruggen AHC	Int J Syst Evol Microbiol	10.1099/ijs.0.058909-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22505

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100912

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89722

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42904.1 )

* These data were automatically processed and therefore are not curated

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